DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vps36 and vps36

DIOPT Version :9

Sequence 1:NP_648660.1 Gene:Vps36 / 39523 FlyBaseID:FBgn0086785 Length:399 Species:Drosophila melanogaster
Sequence 2:NP_956271.1 Gene:vps36 / 335810 ZFINID:ZDB-GENE-030131-7753 Length:382 Species:Danio rerio


Alignment Length:397 Identity:185/397 - (46%)
Similarity:256/397 - (64%) Gaps:19/397 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MNRFAYVEARLSPNESFVSRDNRVKIYDGDQKTDFEDGEVVLTTHRLFWGRPGEIARAAVTLCLP 65
            |:||.:....|..||:.|.:...|::|||:.|...:.|.|||:||||.|   .:.......:|:|
Zfish     1 MDRFMWTNGLLEMNETLVIQQRGVRLYDGEDKAKLDVGGVVLSTHRLLW---RDQKNHECCICIP 62

  Fly    66 LSYVISVSEETTASNFFGRKTRIIMHLHPPTSDKGPGPLDTSRATHIKLSGKNGLSVEFHSALRE 130
            ||.||...|:...   .|:..:|::||||...:|.|||...|:.::||||.|....:||:..|.|
Zfish    63 LSQVIFFEEQAAG---IGKSAKIVIHLHPAPENKEPGPYQHSKYSYIKLSFKEHGQIEFYRRLTE 124

  Fly   131 TLNARVWEILLTSEIIINGVASSPTLEPANDRLARIQKRTGIGGIERHLEAKAKATDENIALAFQ 195
            .:..:.||         |...|.|.......:..| .:..||.||||.||.|.|.||:||:.||:
Zfish   125 EMTQKRWE---------NTPVSQPIPTGTGPKAGR-TRAVGIVGIERKLEEKRKETDKNISEAFE 179

  Fly   196 DLSVLMAMAKDMVGVSKTISSKIRKQKGEISDDETVRFKSYLMSLGIDDPVTRDNFTSNSAYFSS 260
            |||.||..||:||.:|::|::||:.::|:|::|||:||||||:|:||.:||||:...|.:.|...
Zfish   180 DLSKLMEKAKEMVELSRSIANKIKDKQGDITEDETIRFKSYLLSMGIANPVTRETHGSGTQYHIQ 244

  Fly   261 LARQICEMLLDPIEEQGGMMSLADVYCRVNRARGLELLSPEDLLHAC---EQLSGPIRLRSFPSG 322
            ||:|:.:||..|:||:||||:|.:|||.||||||:||||||||::||   |.|..|:|||.|.||
Zfish   245 LAKQLGDMLQAPLEERGGMMALTEVYCLVNRARGMELLSPEDLVNACKIFESLKLPLRLRVFDSG 309

  Fly   323 ARVLQLESHDDALIAVDTLEKVEAAESLAVEELAKQLGISLLLAKERLLVAERLGKVCRDESVEG 387
            ..|:||:||.:..:....|:.|....||..||.||.||:|:||||||||:||::|.:|||:||||
Zfish   310 VMVVQLQSHSEEEMIASALDNVSDKGSLTAEEFAKLLGLSVLLAKERLLLAEKMGHLCRDDSVEG 374

  Fly   388 LRFYPNL 394
            |||||||
Zfish   375 LRFYPNL 381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps36NP_648660.1 PH-GRAM-like_Eap45 1..134 CDD:275408 48/132 (36%)
EAP30 171..382 CDD:282067 118/213 (55%)
vps36NP_956271.1 PH-GRAM-like_Eap45 1..128 CDD:275408 48/132 (36%)
EAP30 155..369 CDD:282067 118/213 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170596208
Domainoid 1 1.000 235 1.000 Domainoid score I2304
eggNOG 1 0.900 - - E1_KOG2760
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H9374
Inparanoid 1 1.050 340 1.000 Inparanoid score I2333
OMA 1 1.010 - - QHG56767
OrthoDB 1 1.010 - - D464204at33208
OrthoFinder 1 1.000 - - FOG0004651
OrthoInspector 1 1.000 - - oto40712
orthoMCL 1 0.900 - - OOG6_102615
Panther 1 1.100 - - LDO PTHR13128
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1653
SonicParanoid 1 1.000 - - X4366
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1716.800

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