DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vps36 and Vps36

DIOPT Version :9

Sequence 1:NP_648660.1 Gene:Vps36 / 39523 FlyBaseID:FBgn0086785 Length:399 Species:Drosophila melanogaster
Sequence 2:NP_001099562.2 Gene:Vps36 / 290851 RGDID:1309754 Length:386 Species:Rattus norvegicus


Alignment Length:401 Identity:181/401 - (45%)
Similarity:265/401 - (66%) Gaps:23/401 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MNRFAYVEARLSPNESFVSRDNRVKIYDGDQKTDFEDGEVVLTTHRLFW--GRPGEIARAAVTLC 63
            |:||.:....|..||:.|.:...|::|||::|..|:.|.::|:||||.|  .:..|...|     
  Rat     1 MDRFVWTSGLLEINETLVIQQRGVRVYDGEEKIKFDAGTLLLSTHRLIWRDQKNNECCMA----- 60

  Fly    64 LPLSYVISVSEETTASNFFGRKTRIIMHLHPPTSDKGPGPLDTSRATHIKLSGKNGLSVEFHSAL 128
            :|||.::.:.|:...   .|:..:|::||||...:|.|||..:|:.::||||.|....:||:..|
  Rat    61 IPLSQIVFIEEQAAG---IGKSAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEFYRRL 122

  Fly   129 RETLNARVWEILLTSEIIINGVASSPTLEPANDRLARIQKRTGIGGIERHLEAKAKATDENIALA 193
            .|.:..|.||.:..|:.:.......|         .|| :..||.||||.||.|.|.||:||:.|
  Rat   123 SEEMTQRRWETVPVSQSLQTKKGPQP---------GRI-RAVGIVGIERKLEEKRKETDKNISEA 177

  Fly   194 FQDLSVLMAMAKDMVGVSKTISSKIRKQKGEISDDETVRFKSYLMSLGIDDPVTRDNFTSNSAYF 258
            |:|||.||..||:||.:||:|::||::::|::::|||:||||||:|:||.:||||:.:.|.:.|.
  Rat   178 FEDLSKLMIKAKEMVELSKSIANKIKEKQGDVTEDETIRFKSYLLSMGIANPVTRETYGSGTQYH 242

  Fly   259 SSLARQICEMLLDPIEEQGGMMSLADVYCRVNRARGLELLSPEDLLHACEQLSG---PIRLRSFP 320
            ..||:|:..:|..|:||:||:|||.:|||.||||||:||||||||::||:.|.|   |:|||.|.
  Rat   243 MQLAKQLAGILQAPLEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEGLKLPVRLRVFD 307

  Fly   321 SGARVLQLESHDDALIAVDTLEKVEAAESLAVEELAKQLGISLLLAKERLLVAERLGKVCRDESV 385
            ||..|::|::|.:..:....||.|....||..||.||.:|:|:||||||||:||::|.:|||:||
  Rat   308 SGVMVIELQTHKEEEMVASALETVSERGSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRDDSV 372

  Fly   386 EGLRFYPNLLL 396
            |||||||||.:
  Rat   373 EGLRFYPNLFM 383

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps36NP_648660.1 PH-GRAM-like_Eap45 1..134 CDD:275408 46/134 (34%)
EAP30 171..382 CDD:282067 115/213 (54%)
Vps36NP_001099562.2 PH-GRAM-like_Eap45 1..128 CDD:275408 44/128 (34%)
EAP30 155..369 CDD:282067 109/216 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166353993
Domainoid 1 1.000 236 1.000 Domainoid score I2266
eggNOG 1 0.900 - - E1_KOG2760
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H9374
Inparanoid 1 1.050 343 1.000 Inparanoid score I2265
OMA 1 1.010 - - QHG56767
OrthoDB 1 1.010 - - D464204at33208
OrthoFinder 1 1.000 - - FOG0004651
OrthoInspector 1 1.000 - - oto98819
orthoMCL 1 0.900 - - OOG6_102615
Panther 1 1.100 - - LDO PTHR13128
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4366
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.770

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