DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tgi and Vgll4

DIOPT Version :9

Sequence 1:NP_729916.1 Gene:Tgi / 39521 FlyBaseID:FBgn0036373 Length:535 Species:Drosophila melanogaster
Sequence 2:NP_001015004.1 Gene:Vgll4 / 297523 RGDID:1311653 Length:287 Species:Rattus norvegicus


Alignment Length:215 Identity:57/215 - (26%)
Similarity:76/215 - (35%) Gaps:95/215 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly   198 YQPH--EAGNSERERE-RERDREDRDMDSPID------MSVTTGALKQRASPPPPYREPLPGTNY 253
            :.||  :..|.:..|: |||.|      |||:      :|:..|.|  .||.|....:||..|..
  Rat    87 FSPHLNKTVNGDCRRDPRERSR------SPIERAAAPAVSLHGGHL--YASLPSLMEQPLALTKN 143

  Fly   254 AAN----------SRPSVIT---------------------QAPPK---REPPEQAHSTDMAMCD 284
            :::          :||||||                     .||..   |.||...     |.||
  Rat   144 SSDTGRSAVERQQNRPSVITCASAGARNCNLSHCPIAHSGCSAPGSASYRRPPSAT-----ATCD 203

  Fly   285 --IDEHFRRSLGENYAALFAKKSPTPTPTPT-------------------------PSPSGTPK- 321
              ::||||||||:||      |.|.|.|...                         .|.|.:|: 
  Rat   204 PVVEEHFRRSLGKNY------KEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDSASSSPES 262

  Fly   322 -----QQVSPLAYGLPSSTS 336
                 |..||.|:.:..|.|
  Rat   263 ASRRGQPASPTAHMVSHSHS 282

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TgiNP_729916.1 VGLL4 <258..297 CDD:291898 22/64 (34%)
TDU 282..297 CDD:197839 10/16 (63%)
TDU 511..526 CDD:197839
Vgll4NP_001015004.1 VGLL4 14..221 CDD:405842 45/152 (30%)
TDU 231..246 CDD:197839 0/14 (0%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_110714
Panther 1 1.100 - - LDO PTHR17604
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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