DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Abp1 and hcls1

DIOPT Version :9

Sequence 1:NP_648657.1 Gene:Abp1 / 39520 FlyBaseID:FBgn0036372 Length:531 Species:Drosophila melanogaster
Sequence 2:XP_005164938.1 Gene:hcls1 / 563056 ZFINID:ZDB-GENE-030131-7191 Length:550 Species:Danio rerio


Alignment Length:547 Identity:120/547 - (21%)
Similarity:183/547 - (33%) Gaps:237/547 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 EKNRAQIVAAWKD----------VLDDKSDTNWSLFGYEGQTNE---LKVVATGDG---GVDELN 54
            ||:::|     ||          |..:|.|.....:.|:|:|.:   .|..|.|.|   ||::  
Zfish   219 EKHQSQ-----KDYAKGFGGKYGVEKEKVDKAALGYDYKGETEKHQSQKDYAKGFGGKYGVEK-- 276

  Fly    55 EDLNSGKIMYAFVRIEDPKTGLNKYLLINWQGEGAPVLRKGTCANH--IRDVSNLLSGAHLTINA 117
            |.::...:.|.:                           ||....|  .:|.:....|.:    .
Zfish   277 EKVDKAALGYDY---------------------------KGETEKHQSQKDYAKGFGGRY----G 310

  Fly   118 RNEDDIDLDRLLKKLSTVSSAYSFKEPRGAMEEQKAPVGTNYTRVIPTKELNASVMQDFWKKEEA 182
            ..||.:|        ...||....:.|..:.|:.:|..|::    :....|.| ..::..|..:.
Zfish   311 VQEDRMD--------KNASSFNKMESPS
SSYEKPQAFEGSS----VGAGNLKA-CFENMAKASDE 362

  Fly   183 EEKLRQEAEKESKRLELQKLEQEQRSR---EEKEHKEREKLVISTTKLQPAHVPIKTSPQPLSPE 244
            :.|.:.| |:.::||..:|.|:|:..|   |:.:|.|.|       |..|..||:...||     
Zfish   363 DNKKKAE-EERTRRLAREKREREEARRKQEEQSQHVEEE-------KQSPPPVPVSQKPQ----- 414

  Fly   245 KTAPGFANNLTDAERMRQARNQEARELIGSRVGAAKAMFTKHTSEGQLQSKLNTQPPAKPARNSI 309
                                 ||.|:|                             |..| |..|
Zfish   415 ---------------------QEFRKL-----------------------------PEIP-REEI 428

  Fly   310 AQRINVFNQNQPQDAPVPS-PPRAASPAKPLPVEAPEPVVPAPAIAPAAPVAAEVVSTIAEVEES 373
            ..  :|..:|||::...|| |||                                          
Zfish   429 EP--DVEEENQPENEEPPSLPPR------------------------------------------ 449

  Fly   374 QPVDDLPLAHESEQFSTIKRSPHSKSNSLQSQSPDETTSSNETDTAVSQEQEEEVRTKVSVTVQQ 438
             |.|.|                           .|||.:..|......:|..|:|.   |.:.| 
Zfish   450 -PSDLL---------------------------EDETYAECEPPPVPQEEDYEDVG---SYSAQ- 482

  Fly   439 SQSVKSSGMSTLERNALTDLVNEDDFICQETLGDLGQRARALYDYQAADETEITFDPGDVITHID 503
                                ..|:|:   |.||..|..|||:||||..|..||:|.|.|:||:|:
Zfish   483 --------------------AGENDY---EDLGGGGTTARAIYDYQGEDSDEISFMPDDIITNIE 524

  Fly   504 QIDEGWWQGLGPDGTYGLFPANYVEII 530
            .:|||||:|: .:|..|||||::||::
Zfish   525 MVDEGWWKGM-CNGRTGLFPASFVELL 550

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Abp1NP_648657.1 ADF_drebrin_like 3..138 CDD:200437 28/149 (19%)
DBINO <173..>207 CDD:290603 9/33 (27%)
SH3_Abp1_eu 476..529 CDD:212893 29/52 (56%)
hcls1XP_005164938.1 HS1_rep 82..117 CDD:280396
HS1_rep 119..154 CDD:280396
HS1_rep 156..191 CDD:280396
HS1_rep 193..228 CDD:280396 5/13 (38%)
HS1_rep 230..265 CDD:280396 7/34 (21%)
HS1_rep 267..302 CDD:280396 10/63 (16%)
HS1_rep 304..>330 CDD:280396 6/37 (16%)
SH3 497..549 CDD:302595 29/52 (56%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.