DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Abp1 and cttn

DIOPT Version :9

Sequence 1:NP_648657.1 Gene:Abp1 / 39520 FlyBaseID:FBgn0036372 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_001004121.1 Gene:cttn / 445561 ZFINID:ZDB-GENE-040715-3 Length:504 Species:Danio rerio


Alignment Length:504 Identity:111/504 - (22%)
Similarity:194/504 - (38%) Gaps:124/504 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   110 GAHLTINARNEDDIDLDRLLKKLSTVSSAYSFKE----PR---------GAMEEQ--KAPVGTNY 159
            ||.....:.:::.|::.:|.:.:||..|....||    |:         |..:::  |:.||..|
Zfish    39 GAKTVQGSGHQEHINIHKLRQTVSTEHSDLKQKELATMPKASHGYGGKFGLQQDRMDKSAVGHEY 103

  Fly   160 TRVIPTKELNASVMQDFWKKEE-AEEKLRQEA---------EKESKR------------LELQKL 202
            ...:..........:.|..|.. .|:::.|.|         ||.:.:            ::..::
Zfish   104 QSKLSKHCSQTDTSKGFGGKYGLQEDRVDQSAVGFEYVGKTEKHASQKDYSTGFGGRYGVQADRV 168

  Fly   203 EQ-----EQRSREEKEHKERE-------KLVISTTKLQPAHVPIKTSPQPLSPEKTAPGFANNLT 255
            :|     |.:.:.||...:::       |..:.|.|:                :|:|.||     
Zfish   169 DQSAVGFEYQGKTEKHESQKDYAKGFGGKFGVETDKV----------------DKSAMGF----- 212

  Fly   256 DAERMRQARNQEAR----ELIGSRVGAAKAMFTKHTSEGQLQSKLNTQPPAKPARNSIAQRINVF 316
              |...:....|::    :..|.:.|..:....|.....:.|.|.......|........:..|.
Zfish   213 --EYQGKTEKHESQKDYVKGFGGKFGVQEDRVDKSAVGYEYQGKTEKHESQKDYSKGFGGKFGVQ 275

  Fly   317 NQNQPQDAPVPSPPRAASPAKPLPVEAPEP----------VVPAPAIAPAAPVAAEVVSTIAEVE 371
            ...|.:.|.      .....:.|.:...:.          .|....:..:|....||....|..:
Zfish   276 TDRQDKSAV------GWDHQEKLQLHESQKDYSKGFGGKYGVQKDRMDKSAGTFEEVQKPSAAYQ 334

  Fly   372 ESQPVDDLPLAHESEQFSTIKRSPHSKSNSLQSQSPDETTSSNETD----TAVSQEQEEEVRTKV 432
            :::||:     ..|...|:||    ::..::..|..:|.....|.:    .|..::::||.||.:
Zfish   335 KTRPVE-----AASSSASSIK----ARFENIAKQKEEEEQQRLEEERSRRQAKEKQEQEEARTHM 390

  Fly   433 SVTVQQSQSVKS----SGMSTLERNALTDLVNE--DDFICQET-----------LGDLGQRARAL 480
            . |.::..||.|    |.:..||::|......|  .:.:.|.|           ..|:|..|.||
Zfish   391 K-TQEEPASVCSVEDGSHVYELEQHAAEHTHEEPPQEDLYQNTEPDTGAESYEYAEDVGITAVAL 454

  Fly   481 YDYQAADETEITFDPGDVITHIDQIDEGWWQGLGPDGTYGLFPANYVEI 529
            ||||||.:.||:|||.|:||:|:.||||||:|: ..|.||.||||:||:
Zfish   455 YDYQAAGDDEISFDPDDIITNIEMIDEGWWRGV-CRGAYGPFPANHVEV 502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Abp1NP_648657.1 ADF_drebrin_like 3..138 CDD:200437 6/27 (22%)
DBINO <173..>207 CDD:290603 9/60 (15%)
SH3_Abp1_eu 476..529 CDD:212893 33/52 (63%)
cttnNP_001004121.1 HS-1 repeat 82..118 5/35 (14%)
HS1_rep 82..117 CDD:280396 5/34 (15%)
HS-1 repeat 119..154 7/34 (21%)
HS1_rep 119..154 CDD:280396 7/34 (21%)
HS-1 repeat 155..191 4/35 (11%)
HS1_rep 156..191 CDD:280396 4/34 (12%)
HS-1 repeat 192..228 9/58 (16%)
HS1_rep 193..227 CDD:280396 9/56 (16%)
HS-1 repeat 229..265 6/35 (17%)
HS1_rep 230..265 CDD:280396 6/34 (18%)
HS-1 repeat 266..302 4/41 (10%)
HS1_rep 267..302 CDD:280396 4/40 (10%)
HS1_rep 304..>331 CDD:280396 4/26 (15%)
SH3 domain 446..488 27/42 (64%)
SH3_Cortactin 450..502 CDD:212892 33/52 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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