DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stv and Bag3

DIOPT Version :9

Sequence 1:NP_001097600.1 Gene:stv / 39518 FlyBaseID:FBgn0086708 Length:635 Species:Drosophila melanogaster
Sequence 2:NP_001011936.1 Gene:Bag3 / 293524 RGDID:1307794 Length:574 Species:Rattus norvegicus


Alignment Length:672 Identity:157/672 - (23%)
Similarity:229/672 - (34%) Gaps:190/672 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 AAGNNVS---PGGPGVNIPVNREYVSGGYGSPQQSAQFHTPQNA----YGSPRQQQQHFQQHQQV 75
            |:||..|   |..||..|.::          ||....|....|:    :..||           |
  Rat    13 ASGNGASDRDPLPPGWEIKID----------PQTGWPFFVDHNSRTTTWNDPR-----------V 56

  Fly    76 PPNQQQQHFQPTFGFEPNMDMDNMFPRSHLGRMHDPFAGFGDSRKRSSLHGPSGQ----VHADDD 136
            ||.                                     |.....||.:|||..    :.|.:.
  Rat    57 PPE-------------------------------------GPKETASSANGPSRDGSRLLPAREG 84

  Fly   137 FPSYFDDPDFGFPRFSTMGRRGRMAGGANTHMDHDDDFFNRLPSEFRQYIPDGFGGRRGTGAAPA 201
            .|.|                 .::..|......|.:...||.|..|..|...|....|...||.|
  Rat    85 HPIY-----------------PQLRPGYIPIPVHHEGSENRQPHLFHAYSQPGVQRFRTEAAAAA 132

  Fly   202 PGQVPQQQQPQPQPQYTQQQPQTHFQFGVPP----QQQPVYAGPTQQQVPQTPSKRLCDAAIQTE 262
            |     |:...|......:..||..|.|..|    .|.|...||.:.|.|         ||....
  Rat   133 P-----QRSQSPLRGGVTETTQTDKQCGQVPAAATAQPPTAHGPERSQSP---------AASDCS 183

  Fly   263 DPAGRSEVDCAPPTNLNQHGL-RNTVDMGVKSVAEQDQGLRSHSAPPPEQQQQNLQYHQQQ--QQ 324
            ..:..:.:..:..::|..|.| |..:.:.|    ..:|.:...:|.|...|.|...|..||  .|
  Rat   184 SSSSSASLPSSGRSSLGSHQLPRGYIPIPV----IHEQNITRPAAQPSFHQAQKTHYPAQQGEYQ 244

  Fly   325 HQQPGVHS--------QPFGTQTSP---PVQG-----------------------------QQFK 349
            .|||..|.        :|. ..|||   ||:|                             .|..
  Rat   245 PQQPVYHKIQGDDWEPRPL-RATSPFRSPVRGASSREGSPARSGTPVHCPSPIRVHTVVDRPQPM 308

  Fly   350 TYYAPHQQTHPQQKQQTPP--PAPQTPGGTYVRTIPIFV---EGRSEPIINAHKEIPNQNAPPSA 409
            |:..|...|.|:.|.::.|  ..|..|.|    .|||.|   |..|:|:        :|..||.|
  Rat   309 THREPPPVTQPENKPESKPGLAGPDLPPG----HIPIQVIRREADSKPV--------SQKPPPPA 361

  Fly   410 QAQAQAQAYAQAQPQAHAAPQQHNRP-TPLNTQAQPE---QQVPVEGAAGL---PPQTPHTLNSI 467
            : :.:.:..:...|.....|.....| :|.|..|:|:   ...|.| ||.|   ..:.||....:
  Rat   362 E-KVEVKVSSAPIPCPSPGPAPSAVPSSPKNVAAEPKAAPSPAPAE-AASLKSGDAEAPHKHPGV 424

  Fly   468 NKIQDIQRDVLELMGKVEQFKGTREEKEYAYLDEMLTRNLLKLDTIDTNGKDSIRLARKEAIKCI 532
            .|::.|...|..|...|:.|:|.:.:|:|..::|.||:.||.||::|..|:..:|.||::.::.:
  Rat   425 LKVEAILEKVQGLEQAVDNFEGKKTDKKYLMIEEYLTKELLALDSVDPEGRADVRQARRDGVRKV 489

  Fly   533 QASINVLEAKAEENARAASGAAPAPSATAPAVD----TGAVAA--SEAAGQNAEPVTPQPQDATK 591
            |..:..||.||.:...........||...|...    .|||||  .:...:|.:|.|...|...|
  Rat   490 QTILEKLEQKAIDVPGQVQVYELQPSNLEPEQPLQEIMGAVAADKDKKGPENEDPQTESQQLEAK 554

  Fly   592 MQEPIPLPAPPNAAAVEGAAAS 613
                  ...|||.::...:|.:
  Rat   555 ------AATPPNPSSTADSAGN 570

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stvNP_001097600.1 BAG 470..541 CDD:280360 22/70 (31%)
Bag3NP_001011936.1 WW 23..55 CDD:197736 8/41 (20%)
BAG 423..500 CDD:214591 24/76 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166352667
Domainoid 1 1.000 59 1.000 Domainoid score I10421
eggNOG 1 0.900 - - E1_KOG4361
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 92 1.000 Inparanoid score I5007
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm44665
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR12329
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.980

Return to query results.
Submit another query.