DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stv and bag3

DIOPT Version :9

Sequence 1:NP_001097600.1 Gene:stv / 39518 FlyBaseID:FBgn0086708 Length:635 Species:Drosophila melanogaster
Sequence 2:NP_001120299.1 Gene:bag3 / 100145358 XenbaseID:XB-GENE-969277 Length:562 Species:Xenopus tropicalis


Alignment Length:643 Identity:145/643 - (22%)
Similarity:227/643 - (35%) Gaps:170/643 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 NPATAAGNNVSPGGPGVNIPVNREYVSGGYG---SPQQSAQFHTPQN----AYGSPRQQ------ 65
            :|.:.:|.|...|..   :|.|.:.:..|:.   .||....|....|    .:..||.|      
 Frog     4 SPVSRSGMNTHQGSV---MPTNSDPLPPGWEMKLDPQTGWPFFVDHNNRITTWTDPRLQDTGKVS 65

  Fly    66 -------QQHFQQ----------HQQVPP------------NQQQQHFQPTFGF-EPNMDMDNMF 100
                   .|..|:          :.|:.|            ..:|||  |.... :|.|......
 Frog    66 QALANGPSQESQKPLPLREGNVYYPQLRPGYIPIPVMHEGAESRQQH--PFHALHQPGMQRVRCE 128

  Fly   101 PRSHLGRMHDPFAGFGDSRKRSSLHGPSGQVHADDDFPSYFDDPDFGFPRFSTMGRRGRMAGGAN 165
            |.|...|...|...|  :|.:|.....|....||..        ..|.|..|    |........
 Frog   129 PISTQNRPQSPLRNF--NRPQSPAWSASETPQADRQ--------GMGSPSLS----RSPQGPSPP 179

  Fly   166 THMDHDDDFFNRLPSEFRQYIPDGFGGRRGTGAAPAP-GQVP-----QQQQPQPQPQYTQQQPQT 224
            ..:.......::.||            |:..|:.|.| |.:|     :...|:|..|..|.:|:.
 Frog   180 PSIAESQSHLSQSPS------------RQSAGSYPLPRGYIPIPVLHEGNAPRPPSQAFQTRPKN 232

  Fly   225 HFQFGVPPQQ--QPVY--------AGPTQQQVPQTPSKRLCDAAIQTEDPAGRSEVDCAPPTNLN 279
            |:..|....|  .||:        :.|...|..:|.:|           |.  |..:.:|..||:
 Frog   233 HYPQGTVDYQTHYPVFHKIQDERDSRPVPVQSTRTTAK-----------PT--SSREGSPVHNLS 284

  Fly   280 QHGLRNTVDMGVKSVAEQDQGLRSHSAPPPEQQQQNLQYHQQQQQHQQPGVHSQPFGTQTSP--- 341
            |    :...:.|....|:.   ..|..|.|            ::...:|...::|    |||   
 Frog   285 Q----SPATIKVLHAMEKP---HVHQIPQP------------RESSPKPPAENKP----TSPTRD 326

  Fly   342 PVQGQ-------QFKTYYAPHQQTHP-QQKQQTPPPAPQTPGGTYVRTIPIFVEGRSEPIINAHK 398
            .:|||       |.|...:|.....| :::::.|.|.|..|        |..:     |::.|..
 Frog   327 QLQGQIPIQVLLQEKVCKSPPPTAAPTREEEKVPAPVPMAP--------PEII-----PVVPAPV 378

  Fly   399 EIPNQNAPPSAQAQAQAQAYAQAQPQAHAAPQQHNRPTPLNTQAQPEQQVPV-EGAAGLP-PQTP 461
            .:|.....|...|..     ....|:....|.....|.|   :..|..|.|. |.||.:| ||..
 Frog   379 PMPPPEVIPVVPAPV-----PMPPPEVIPVPSPVPMPPP---EVPPVPQEPAPEKAAEVPEPQHK 435

  Fly   462 HTLNSINKIQDIQRDVLELMGKVEQ----FKGTREEKEYAYLDEMLTRNLLKLDTIDTNGKDSIR 522
            |.     .:..::| :||.:..:||    |:|.:.||.|..|:|.||:.||.||::|..|:..:|
 Frog   436 HP-----GVLQVER-ILERIKPMEQAVTGFRGRKNEKAYLILEEDLTKVLLALDSVDPEGRVDVR 494

  Fly   523 LARKEAIKCIQASINVLEAKAEENARAASGAAPAPSATAPAVDTGAVAASEAAGQNAE 580
            .||::.::.:|..:.:||.||.||::.:.|:..|..:.........|..|..|.|||:
 Frog   495 QARRDGVRKVQKVLEILEQKASENSQCSQGSDSAGGSQDSMDVDNTVYRSSGATQNAQ 552

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stvNP_001097600.1 BAG 470..541 CDD:280360 25/74 (34%)
bag3NP_001120299.1 WW 25..58 CDD:197736 6/32 (19%)
BAG 438..515 CDD:214591 26/77 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm47709
Panther 1 1.100 - - LDO PTHR12329
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R7026
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.130

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