DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment flr and Wdr1

DIOPT Version :9

Sequence 1:NP_648642.1 Gene:flr / 39505 FlyBaseID:FBgn0260049 Length:608 Species:Drosophila melanogaster
Sequence 2:NP_001014157.1 Gene:Wdr1 / 360950 RGDID:1305789 Length:606 Species:Rattus norvegicus


Alignment Length:605 Identity:293/605 - (48%)
Similarity:414/605 - (68%) Gaps:11/605 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 YENKNIYATLPRTQRGQPIVLGADPKGKNFLYTNGNSVIIRNIENPAIADVYTEHSCAVNVAKYS 73
            ||.|.::|:||:.:||...:||.||||.|||||||..||:|||:|||:||:||||:..|.||||:
  Rat     3 YEIKKVFASLPQVERGVSKILGGDPKGDNFLYTNGKCVILRNIDNPAVADIYTEHAHQVVVAKYA 67

  Fly    74 PSGFYIASGDASGKIRIWDTVNKEHLLKNEFQPIAGPIKDISWSPDNQRIVAVGEGRERFGHVFM 138
            ||||||||||.|||:|||||..|||:||.|:||.||.||||:|:.|::||..||||||:||.||:
  Rat    68 PSGFYIASGDISGKLRIWDTTQKEHILKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKFGAVFL 132

  Fly   139 SETGTSVGEISGQSKSINSADFRPARPFRIVTGSEDNTIAVFEGPPFKFKMTKQDHSRFVQAVRY 203
            .:||:|||||:|.:|.|||.|.:..||:|:.|||:||..|.|||||||||.|..||||||..||:
  Rat   133 WDTGSSVGEITGHNKVINSVDIKQNRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRF 197

  Fly   204 SPDGKFFASAGFDGKVFLYDGTSSELVGEF-GSPAHKGGVYALAWKPDSTQLLTCSGDKTCRLWT 267
            ||||..||:|..||::|:|||.:.|.|... ||.||.||:||::|.||||.||:.|||||.::|.
  Rat   198 SPDGNRFATASADGQIFIYDGKTGEKVCALGGSKAHDGGIYAISWSPDSTHLLSASGDKTSKIWD 262

  Fly   268 VESRELVSEFVMGTTVDDQQVSCLWQGDNLITVSLSGVITYLNVADPSKPLRVVKGHNKPITVLG 332
            |....:||.|.||:.|.|||:.||||.|:|:::||||.|.||:..:|||||||:|||:|.|..|.
  Rat   263 VNVNSVVSTFPMGSNVLDQQLGCLWQKDHLLSISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLT 327

  Fly   333 L--SDDRSTIYTGSHDGVVTNWNSGSGTNDRITGTGHGNQINGIAA--WGDFVYTCGIDDSLRQF 393
            :  :..:|.||:|||||.:..|:|.:|.||..:|.||.||::.:..  .|..| :|.:||::|..
  Rat   328 VHKNGGKSYIYSGSHDGHINYWDSETGENDSFSGKGHTNQVSRMTVDESGQLV-SCSMDDTVRYT 391

  Fly   394 SVEGNSYTDY-VVKLNCQPRGLAILRNENIIALACIKELTLVQDQKKIFSLPIK-YEASSIAVNA 456
            ::....|:.. ||||:.||:.:|: .......:.||.::.|::||||.||:... ||...:||:.
  Rat   392 NLTLRDYSGQGVVKLDVQPKCVAV-GPGGYTVVVCIGQIVLLKDQKKCFSIDNPGYEPEVVAVHP 455

  Fly   457 DTSDVAVGGDDQKLHIYTLKGGVLEPKVE-LDHLGAVTDVSYSPDLKYLVACDAHRKVVLYSVEE 520
            ....|||||.|..:.:|::.|..|:.:.: |:..|.|||::||.|..:|..|||.:.|.::||.:
  Rat   456 GGDTVAVGGSDGNVRVYSILGATLKDEGKLLEAKGPVTDLAYSHDGAFLAVCDASKVVTVFSVAD 520

  Fly   521 YKPAHNKEWGFHSARVNTVAWSPNSLLVASGSLDTTIIIWSVANPAKHTIIKNAHPQSQITRLVW 585
            ....:|..:| |.|::..:||||::...|||.:|..:.:|::::|.....|::||....::.|.|
  Rat   521 GYSENNVFYG-HHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDPETKVKIQDAHRLHHVSSLAW 584

  Fly   586 LDNNTVISTGQDCNTKVWHV 605
            ||.:|:::|..|.:.|.|.:
  Rat   585 LDEHTLVTTSHDASVKEWTI 604

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
flrNP_648642.1 WD40 26..557 CDD:225201 271/538 (50%)
WD40 59..353 CDD:238121 175/296 (59%)
WD40 repeat 68..106 CDD:293791 28/37 (76%)
WD40 repeat 111..149 CDD:293791 24/37 (65%)
WD40 repeat 156..192 CDD:293791 22/35 (63%)
WD40 repeat 198..234 CDD:293791 18/36 (50%)
WD40 repeat 242..278 CDD:293791 18/35 (51%)
WD40 repeat 287..306 CDD:293791 11/18 (61%)
WD40 317..607 CDD:295369 105/296 (35%)
WD40 repeat 330..352 CDD:293791 9/23 (39%)
WD40 repeat 372..407 CDD:293791 9/37 (24%)
WD40 repeat 411..442 CDD:293791 9/30 (30%)
WD40 repeat 450..485 CDD:293791 11/34 (32%)
WD40 repeat 492..528 CDD:293791 14/35 (40%)
WD40 520..>607 CDD:225201 26/86 (30%)
WD40 repeat 536..573 CDD:293791 11/36 (31%)
WD40 repeat 580..603 CDD:293791 8/22 (36%)
Wdr1NP_001014157.1 WD 1 4..45 23/40 (58%)
WD 2 48..87 29/38 (76%)
WD40 53..476 CDD:225201 219/424 (52%)
WD40 54..389 CDD:238121 190/335 (57%)
WD40 repeat 62..100 CDD:293791 28/37 (76%)
WD 3 93..135 25/41 (61%)
WD40 repeat 105..143 CDD:293791 24/37 (65%)
WD 4 138..176 21/37 (57%)
WD40 repeat 150..186 CDD:293791 22/35 (63%)
WD 5 180..218 23/37 (62%)
WD40 repeat 192..228 CDD:293791 18/35 (51%)
WD 6 224..263 22/38 (58%)
WD40 repeat 237..273 CDD:293791 18/35 (51%)
WD 7 270..306 21/35 (60%)
WD 8 311..351 20/39 (51%)
WD40 312..602 CDD:295369 104/292 (36%)
WD40 repeat 325..361 CDD:293791 14/35 (40%)
WD 9 358..408 16/50 (32%)
WD 10 432..474 17/41 (41%)
WD40 repeat 445..487 CDD:293791 13/41 (32%)
WD 11 480..518 13/37 (35%)
WD40 repeat 492..516 CDD:293791 11/23 (48%)
WD 12 523..561 13/38 (34%)
WD40 repeat 535..572 CDD:293791 11/36 (31%)
WD 13 566..604 12/37 (32%)
WD40 repeat 579..604 CDD:293791 9/24 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166351026
Domainoid 1 1.000 134 1.000 Domainoid score I4864
eggNOG 1 0.900 - - E1_KOG0318
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6628
Inparanoid 1 1.050 581 1.000 Inparanoid score I983
OMA 1 1.010 - - QHG53916
OrthoDB 1 1.010 - - D179485at33208
OrthoFinder 1 1.000 - - FOG0003250
OrthoInspector 1 1.000 - - oto95872
orthoMCL 1 0.900 - - OOG6_102813
Panther 1 1.100 - - LDO PTHR19856
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2198
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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