DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment flr and ebi

DIOPT Version :10

Sequence 1:NP_648642.1 Gene:flr / 39505 FlyBaseID:FBgn0260049 Length:608 Species:Drosophila melanogaster
Sequence 2:NP_477329.1 Gene:ebi / 33212 FlyBaseID:FBgn0263933 Length:700 Species:Drosophila melanogaster


Alignment Length:564 Identity:116/564 - (20%)
Similarity:187/564 - (33%) Gaps:203/564 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 TNGNSVIIRNIENPAIADVYTEHSCAVNVAKYSPSGFYIASGDASGKIRIWDTVNKEHLLKNEFQ 105
            |||||....::|.|.                   ||...|.|..|       |.|.:........
  Fly   241 TNGNSSTSSSVEQPT-------------------SGLTPAGGTVS-------TSNPDAAASGGAS 279

  Fly   106 PIAGPIKDISWSPDNQRIVAVG-EGRERFGHVFMSETGTSVGEISGQSKSINSADFRPA-RPFRI 168
            ...|     |.:|.....:.|| :|..       .::|:|..:.|..|.:|:|:....| .|..:
  Fly   280 TATG-----SKAPSGAVTIRVGAQGNN-------VQSGSSNAQSSAPSGTISSSTSGGAGTPAAL 332

  Fly   169 VTGSEDNTIAVFEGPPFKFKMTKQDHSRFVQAVRYSPDGKFFASAGFDGKVFLYDGTSSELVGEF 233
            |....|..|.:                         |:.|.....|.:.:||:            
  Fly   333 VPMDIDENIEI-------------------------PESKARVLRGHESEVFI------------ 360

  Fly   234 GSPAHKGGVYALAWKPDSTQLLTCSGDKTCRLWTVESRELVSEFVMGTTVDDQQV--SCLWQGDN 296
                       .||.|....|.:.|||.|.|:|.:..         ..|..:|.|  .|:.:|..
  Fly   361 -----------CAWNPSRDLLASGSGDSTARIWDMSD---------ANTNSNQLVLRHCIQKGGA 405

  Fly   297 LITVSLSGVITYLNVADPSKPLRVVKGHNKPITVLGLSDDRSTIYTGSHDGVVTNWNSGSGTNDR 361
            .:               ||         ||.:|.|..:.|.|.:.|||:||....|.    |:.|
  Fly   406 EV---------------PS---------NKDVTSLDWNCDGSLLATGSYDGYARIWK----TDGR 442

  Fly   362 ITGT--GHGNQINGIAAW---GDFVYTCGIDDSLRQFSVEGNSYTDYVVKLNCQPRGLAILRNEN 421
            :..|  .|...|..: .|   |:::.:.|:|                                  
  Fly   443 LASTLGQHKGPIFAL-KWNKCGNYILSAGVD---------------------------------- 472

  Fly   422 IIALACIKELTLVQD-------QKKIFSLPIKYEASSIAVNADTSDV-AVGGDDQKLHIYTLKGG 478
                    :.|::.|       |:..|     :.|.::.|:..|:.. |....||::|:..|  |
  Fly   473 --------KTTIIWDASTGQCTQQFAF-----HSAPALDVDWQTNQAFASCSTDQRIHVCRL--G 522

  Fly   479 VLEP-KVELDHLGAVTDVSYSPDLKYLVACDAHRKVVLYSVEEYKPAHNKEWGFHSARVNTVAWS 542
            |.|| |....|...|..:.:.|..:.|.:|.....:.::|:...:..|:.:  .||..:.|:.||
  Fly   523 VNEPIKTFKGHTNEVNAIKWCPQGQLLASCSDDMTLKIWSMNRDRCCHDLQ--AHSKEIYTIKWS 585

  Fly   543 P---------NSLLVASGSLDTTIIIWSV-ANPAKHTIIKNAHP 576
            |         .:|::||.|.|:|:.:|.| .....||:.|:..|
  Fly   586 PTGPGTNNPNTNLILASASFDSTVRLWDVERGSCIHTLTKHTEP 629

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
flrNP_648642.1 WD40 16..397 CDD:441893 74/364 (20%)
WD40 repeat 68..106 CDD:293791 7/37 (19%)
WD40 repeat 111..149 CDD:293791 7/38 (18%)
WD40 repeat 156..192 CDD:293791 6/36 (17%)
WD40 repeat 198..234 CDD:293791 5/35 (14%)
WD40 repeat 242..278 CDD:293791 10/35 (29%)
WD40 repeat 287..306 CDD:293791 3/20 (15%)
WD40 repeat 330..352 CDD:293791 8/21 (38%)
WD40 repeat 372..407 CDD:293791 4/37 (11%)
WD40 repeat 411..442 CDD:293791 3/37 (8%)
WD40 repeat 450..485 CDD:293791 12/36 (33%)
WD40 488..>607 CDD:475233 25/99 (25%)
WD40 repeat 492..528 CDD:293791 6/35 (17%)
WD40 repeat 536..573 CDD:293791 14/46 (30%)
WD40 repeat 580..603 CDD:293791
ebiNP_477329.1 LisH 3..36 CDD:128913
dermokine <101..>312 CDD:455732 22/108 (20%)
WD40 349..655 CDD:238121 83/393 (21%)
WD40 repeat 358..402 CDD:293791 16/75 (21%)
WD40 repeat 414..449 CDD:293791 13/38 (34%)
WD40 repeat 454..490 CDD:293791 8/78 (10%)
WD40 repeat 497..531 CDD:293791 12/35 (34%)
WD40 repeat 537..573 CDD:293791 6/35 (17%)
WD40 repeat 579..624 CDD:293791 14/44 (32%)
WD40 repeat 630..654 CDD:293791 116/564 (21%)
Blue background indicates that the domain is not in the aligned region.

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