Protein Alignment Poc1 and poc1b

DIOPT Version :10

• Sequence 1: NP_001261799.1
• Gene: Poc1 / 39502
• FlyBaseID: FBgn0036354
• Length: 403
• Species: Drosophila melanogaster
• Sequence 2: XP_012814294.1
• Gene: poc1b / 448445
• XenbaseID: XB-GENE-944930
• Length: 470
• Species: Xenopus tropicalis
• Alignment Length: 388
• Identity: 154/388 - (39%)
• Similarity: 235/388 - (60%)
• Gaps: 9/388 - (2%)

  Fly     1 MQGLFRDPALERHFTGHSGGITQLRFGPDGAQIATSSTDSTVILWNLNQAARCIRFASHSAPVNG 65
            |.....||||:|||.||...:|.:.|.|||.|:|:||.|:.|::||....:|..::..|...|..
 Frog     1 MASALEDPALQRHFKGHKDAVTYVDFSPDGKQLASSSADACVMIWNFKPQSRAYKYPGHKEAVTC 65

  Fly    66 VAWSPKGNLVASAGHDRTVKIWEPKLRGVSGEFVAHSKAVRSVDFDSTGHLMLTASDDKSAKIWR 130
            |.:||.|:||||:..||||::|.|.::|.|....||:..||.|:|.|.||..:|||||||.|.|.
 Frog    66 VQFSPSGHLVASSSKDRTVRLWAPNIKGESSVLKAHTAVVRCVNFSSDGHTFITASDDKSIKAWN 130

  Fly   131 VARRQFVSSFAQQNNWVRSAKFSPNGKLVATASDDKSVRIYDVDSGECVRTFTEERAAPRQLAWH 195
            :.|::|:.|..:..||||.|:|||:|:|:|:.||||:|||:|:.:..|:.||.:.:.....:.::
 Frog   131 LHRQRFLYSLTEHTNWVRCARFSPDGRLIASCSDDKTVRIWDITNRLCINTFVDYKGHSNYVDFN 195

  Fly   196 PWGNMLAVALGCNRIKIFDVSGSQLLQLYVVHSAPVNDVAFHPSGHFLLSGSDDRTIRILDLLEG 260
            |.|..:|.|...:.:|::|:..::|||.|.||:|.||.::|||||::||:.|:|.|::|||||||
 Frog   196 PMGTCVASAGVDSTVKVWDIRTNKLLQHYQVHNAGVNSLSFHPSGNYLLTASNDGTVKILDLLEG 260

  Fly   261 RPIYTLTGHTDAVNAVAFSRDGDKFATGGSDRQLLVWQSNLHTYDASQ---FEAKSALASSSCES 322
            |.||||.||...|.:||||:.||:||:|.:|.|:|||::|...|:..:   .:.|.....:....
 Frog   261 RLIYTLHGHQGPVLSVAFSKSGDQFASGATDAQVLVWKTNFDKYNIKEIVKLQQKRTCPEAPPHL 325

  Fly   323 SGVSSKQSEGSSTSKSNDLSIRIDPRQSLAYQLSEENFQVLDVSIESGSDLCSCSARLDEISK 385
            :.:..|...   ...|:..||.|:|...||   ..:.|....:.:.:....|..:..|..::|
 Frog   326 NDIYPKTPH---LHTSSGHSIEINPMFELA---DTQTFDPPIIDVGANFPYCRQTKALHTLNK 382

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Poc1	NP_001261799.1	WD40	<7..298	CDD:441893	137/290 (47%)
		WD40 repeat	22..58	CDD:293791	14/35 (40%)
		WD40 repeat	63..99	CDD:293791	17/35 (49%)
		WD40 repeat	106..140	CDD:293791	17/33 (52%)
		WD40 repeat	147..183	CDD:293791	19/35 (54%)
		WD40 repeat	189..224	CDD:293791	9/34 (26%)
		WD40 repeat	231..254	CDD:293791	12/22 (55%)
		WD40 repeat	273..297	CDD:293791	13/23 (57%)
poc1b	XP_012814294.1	WD40	<5..300	CDD:441893	138/294 (47%)
		WD40 repeat	21..58	CDD:293791	14/36 (39%)
		WD40 repeat	64..100	CDD:293791	16/35 (46%)
		WD40 repeat	105..141	CDD:293791	19/35 (54%)
		WD40 repeat	148..183	CDD:293791	18/34 (53%)
		WD40 repeat	190..225	CDD:293791	9/34 (26%)
		WD40 repeat	231..267	CDD:293791	23/35 (66%)
		WD40 repeat	273..297	CDD:293791	13/23 (57%)