DRSC/TRiP Functional Genomics Resources

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Protein Alignment Poc1 and poc1b

DIOPT Version :9

Sequence 1:NP_001261799.1 Gene:Poc1 / 39502 FlyBaseID:FBgn0036354 Length:403 Species:Drosophila melanogaster
Sequence 2:XP_012814294.1 Gene:poc1b / 448445 XenbaseID:XB-GENE-944930 Length:470 Species:Xenopus tropicalis


Alignment Length:388 Identity:154/388 - (39%)
Similarity:235/388 - (60%) Gaps:9/388 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQGLFRDPALERHFTGHSGGITQLRFGPDGAQIATSSTDSTVILWNLNQAARCIRFASHSAPVNG 65
            |.....||||:|||.||...:|.:.|.|||.|:|:||.|:.|::||....:|..::..|...|..
 Frog     1 MASALEDPALQRHFKGHKDAVTYVDFSPDGKQLASSSADACVMIWNFKPQSRAYKYPGHKEAVTC 65

  Fly    66 VAWSPKGNLVASAGHDRTVKIWEPKLRGVSGEFVAHSKAVRSVDFDSTGHLMLTASDDKSAKIWR 130
            |.:||.|:||||:..||||::|.|.::|.|....||:..||.|:|.|.||..:|||||||.|.|.
 Frog    66 VQFSPSGHLVASSSKDRTVRLWAPNIKGESSVLKAHTAVVRCVNFSSDGHTFITASDDKSIKAWN 130

  Fly   131 VARRQFVSSFAQQNNWVRSAKFSPNGKLVATASDDKSVRIYDVDSGECVRTFTEERAAPRQLAWH 195
            :.|::|:.|..:..||||.|:|||:|:|:|:.||||:|||:|:.:..|:.||.:.:.....:.::
 Frog   131 LHRQRFLYSLTEHTNWVRCARFSPDGRLIASCSDDKTVRIWDITNRLCINTFVDYKGHSNYVDFN 195

  Fly   196 PWGNMLAVALGCNRIKIFDVSGSQLLQLYVVHSAPVNDVAFHPSGHFLLSGSDDRTIRILDLLEG 260
            |.|..:|.|...:.:|::|:..::|||.|.||:|.||.::|||||::||:.|:|.|::|||||||
 Frog   196 PMGTCVASAGVDSTVKVWDIRTNKLLQHYQVHNAGVNSLSFHPSGNYLLTASNDGTVKILDLLEG 260

  Fly   261 RPIYTLTGHTDAVNAVAFSRDGDKFATGGSDRQLLVWQSNLHTYDASQ---FEAKSALASSSCES 322
            |.||||.||...|.:||||:.||:||:|.:|.|:|||::|...|:..:   .:.|.....:....
 Frog   261 RLIYTLHGHQGPVLSVAFSKSGDQFASGATDAQVLVWKTNFDKYNIKEIVKLQQKRTCPEAPPHL 325

  Fly   323 SGVSSKQSEGSSTSKSNDLSIRIDPRQSLAYQLSEENFQVLDVSIESGSDLCSCSARLDEISK 385
            :.:..|...   ...|:..||.|:|...||   ..:.|....:.:.:....|..:..|..::|
 Frog   326 NDIYPKTPH---LHTSSGHSIEINPMFELA---DTQTFDPPIIDVGANFPYCRQTKALHTLNK 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Poc1NP_001261799.1 WD40 10..298 CDD:238121 134/287 (47%)
WD40 14..388 CDD:225201 147/375 (39%)
WD40 repeat 22..58 CDD:293791 14/35 (40%)
WD40 repeat 63..99 CDD:293791 17/35 (49%)
WD40 repeat 106..140 CDD:293791 17/33 (52%)
WD40 repeat 147..183 CDD:293791 19/35 (54%)
WD40 repeat 189..224 CDD:293791 9/34 (26%)
WD40 repeat 231..254 CDD:293791 12/22 (55%)
WD40 repeat 273..297 CDD:293791 13/23 (57%)
poc1bXP_012814294.1 WD40 12..298 CDD:238121 133/285 (47%)
WD40 repeat 21..58 CDD:293791 14/36 (39%)
WD40 repeat 64..100 CDD:293791 16/35 (46%)
WD40 repeat 105..141 CDD:293791 19/35 (54%)
WD40 repeat 148..183 CDD:293791 18/34 (53%)
WD40 repeat 190..225 CDD:293791 9/34 (26%)
WD40 repeat 231..267 CDD:293791 23/35 (66%)
WD40 repeat 273..297 CDD:293791 13/23 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 305 1.000 Inparanoid score I2604
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1196215at2759
OrthoFinder 1 1.000 - - FOG0003920
OrthoInspector 1 1.000 - - otm48917
Panther 1 1.100 - - O PTHR44019
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4724
SonicParanoid 1 1.000 - - X2699
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.100

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