DRSC/TRiP Functional Genomics Resources

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Protein Alignment Poc1 and poc1a

DIOPT Version :10

Sequence 1:NP_001261799.1 Gene:Poc1 / 39502 FlyBaseID:FBgn0036354 Length:403 Species:Drosophila melanogaster
Sequence 2:XP_073771774.1 Gene:poc1a / 406322 ZFINID:ZDB-GENE-040426-1993 Length:440 Species:Danio rerio


Alignment Length:346 Identity:145/346 - (41%)
Similarity:218/346 - (63%) Gaps:3/346 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQGLFRDPALERHFTGHSGGITQLRFGPDGAQIATSSTDSTVILWNLNQAARCIRFASHSAPVNG 65
            |.....||.|||:|.||...||.|.|.|.|.|||:.|.|:.|::||:...:|..||..|...|..
Zfish     1 MSSALDDPTLERNFKGHRDAITSLDFSPSGKQIASGSVDACVMVWNMKPQSRAYRFTGHKDAVTC 65

  Fly    66 VAWSPKGNLVASAGHDRTVKIWEPKLRGVSGEFVAHSKAVRSVDFDSTGHLMLTASDDKSAKIWR 130
            |.:||..:|:||:..|:||::|.|.::|.|..|.||:.:||||.|.:.|..:||||||:|.|:|.
Zfish    66 VQFSPSAHLLASSSRDKTVRLWVPSVKGESVLFRAHTGSVRSVCFSADGQSLLTASDDQSIKLWS 130

  Fly   131 VARRQFVSSFAQQNNWVRSAKFSPNGKLVATASDDKSVRIYDVDSGECVRTFTEERAAPRQLAWH 195
            |.|::.:.:..:.|||||.|:|||:|:|:.:.|||::|:::|..|.:.:.||.|.......:.:|
Zfish   131 VHRQKIICTLREHNNWVRCARFSPDGQLMVSVSDDRTVKLWDASSRQLIHTFCEPGGYSSYVDFH 195

  Fly   196 PWGNMLAVALGCNRIKIFDVSGSQLLQLYVVHSAPVNDVAFHPSGHFLLSGSDDRTIRILDLLEG 260
            |....:|.|...|.::::|:....|||.|.||||.||.::|||||:.||:.|.|.|::|||||||
Zfish   196 PSSTCIATASSDNTVRVWDIRTHTLLQHYQVHSAAVNALSFHPSGNHLLTASSDSTLKILDLLEG 260

  Fly   261 RPIYTLTGHTDAVNAVAFSRDGDKFATGGSDRQLLVWQSNLHTYDASQ-FEAKSALASSSCESSG 324
            |.:|||.||..:.:.|:|||.||:||:.|||:|::||::|..:.|.|: .:.|....:.|.::||
Zfish   261 RLLYTLHGHQGSASCVSFSRSGDQFASAGSDQQVMVWRTNFDSVDYSRVLQQKRDHRTPSAQASG 325

  Fly   325 VSS--KQSEGSSTSKSNDLSI 343
            .:.  :...|..|..|..|.:
Zfish   326 AAGDPESRSGQKTEVSPLLGV 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Poc1NP_001261799.1 WD40 <7..298 CDD:441893 132/290 (46%)
WD40 repeat 22..58 CDD:293791 16/35 (46%)
WD40 repeat 63..99 CDD:293791 14/35 (40%)
WD40 repeat 106..140 CDD:293791 16/33 (48%)
WD40 repeat 147..183 CDD:293791 15/35 (43%)
WD40 repeat 189..224 CDD:293791 9/34 (26%)
WD40 repeat 231..254 CDD:293791 12/22 (55%)
WD40 repeat 273..297 CDD:293791 12/23 (52%)
poc1aXP_073771774.1 None

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