DRSC/TRiP Functional Genomics Resources

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Protein Alignment Poc1 and poc1b

DIOPT Version :10

Sequence 1:NP_001261799.1 Gene:Poc1 / 39502 FlyBaseID:FBgn0036354 Length:403 Species:Drosophila melanogaster
Sequence 2:NP_956412.1 Gene:poc1b / 386932 ZFINID:ZDB-GENE-031118-54 Length:490 Species:Danio rerio


Alignment Length:300 Identity:141/300 - (47%)
Similarity:204/300 - (68%) Gaps:0/300 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQGLFRDPALERHFTGHSGGITQLRFGPDGAQIATSSTDSTVILWNLNQAARCIRFASHSAPVNG 65
            |..:..||.|||||.||...|:...|.|:..|:||.|.|.::::|||...||..||..|:..:.|
Zfish     1 MASVMEDPTLERHFKGHKDVISCADFNPNNKQLATGSCDKSLMIWNLAPKARAFRFVGHTDVITG 65

  Fly    66 VAWSPKGNLVASAGHDRTVKIWEPKLRGVSGEFVAHSKAVRSVDFDSTGHLMLTASDDKSAKIWR 130
            |.::|.|:||||:..|:||::|.|.::|.|..|.||:.:||||:|...|..::|||||||.|:|.
Zfish    66 VNFAPSGSLVASSSRDQTVRLWTPSIKGESTVFKAHTASVRSVNFSRDGQRLVTASDDKSVKVWG 130

  Fly   131 VARRQFVSSFAQQNNWVRSAKFSPNGKLVATASDDKSVRIYDVDSGECVRTFTEERAAPRQLAWH 195
            |.|::|:.|..:..||||.|:|||:|:|:|:..||::||::|..|.:|...||:...:...:.::
Zfish   131 VERKKFLYSLNRHTNWVRCARFSPDGRLIASCGDDRTVRLWDTSSHQCTNIFTDYGGSATFVDFN 195

  Fly   196 PWGNMLAVALGCNRIKIFDVSGSQLLQLYVVHSAPVNDVAFHPSGHFLLSGSDDRTIRILDLLEG 260
            ..|..:|.:...|.|||:|:..::|:|.|.||:|.||..:|||||::|:|||.|.||:|||||||
Zfish   196 SSGTCIASSGADNTIKIWDIRTNKLIQHYKVHNAGVNCFSFHPSGNYLISGSSDSTIKILDLLEG 260

  Fly   261 RPIYTLTGHTDAVNAVAFSRDGDKFATGGSDRQLLVWQSN 300
            |.||||.||...|..|.||||||.||:||:|.|:|:|::|
Zfish   261 RLIYTLHGHKGPVLTVTFSRDGDLFASGGADSQVLMWKTN 300

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Poc1NP_001261799.1 WD40 <7..298 CDD:441893 138/290 (48%)
WD40 repeat 22..58 CDD:293791 14/35 (40%)
WD40 repeat 63..99 CDD:293791 15/35 (43%)
WD40 repeat 106..140 CDD:293791 17/33 (52%)
WD40 repeat 147..183 CDD:293791 16/35 (46%)
WD40 repeat 189..224 CDD:293791 9/34 (26%)
WD40 repeat 231..254 CDD:293791 14/22 (64%)
WD40 repeat 273..297 CDD:293791 15/23 (65%)
poc1bNP_956412.1 WD40 <6..300 CDD:441893 139/293 (47%)
WD 1. /evidence=ECO:0000255 16..55 15/38 (39%)
WD40 repeat 22..58 CDD:293791 14/35 (40%)
WD 2. /evidence=ECO:0000255 58..97 16/38 (42%)
WD40 repeat 63..99 CDD:293791 15/35 (43%)
WD 3. /evidence=ECO:0000255 100..139 20/38 (53%)
WD40 repeat 106..141 CDD:293791 18/34 (53%)
WD 4. /evidence=ECO:0000255 142..181 18/38 (47%)
WD40 repeat 147..181 CDD:293791 16/33 (48%)
WD 5. /evidence=ECO:0000255 184..223 8/38 (21%)
WD40 repeat 189..225 CDD:293791 9/35 (26%)
WD 6. /evidence=ECO:0000255 226..265 26/38 (68%)
WD40 repeat 231..254 CDD:293791 14/22 (64%)
WD 7. /evidence=ECO:0000255 268..307 18/32 (56%)
WD40 repeat 273..314 CDD:293791 16/27 (59%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 375..427
Blue background indicates that the domain is not in the aligned region.

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