DRSC/TRiP Functional Genomics Resources

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Protein Alignment Poc1 and Ciao1

DIOPT Version :10

Sequence 1:NP_001261799.1 Gene:Poc1 / 39502 FlyBaseID:FBgn0036354 Length:403 Species:Drosophila melanogaster
Sequence 2:NP_610996.1 Gene:Ciao1 / 36655 FlyBaseID:FBgn0033972 Length:335 Species:Drosophila melanogaster


Alignment Length:351 Identity:95/351 - (27%)
Similarity:150/351 - (42%) Gaps:72/351 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 HSAPVNGVAWSPKGNLVASAGHDRTVKIWEPKLRGVSGEFV---AHSKAVRSVDFDSTGHLMLTA 120
            |...:.||||.||||:.||.|.|:.::||.......|.:.:   .|.:.:|.:.:...|..:.:|
  Fly    13 HKGRIWGVAWHPKGNVFASCGEDKAIRIWSLTGNTWSTKTILSDGHKRTIREIRWSPCGQYLASA 77

  Fly   121 SDDKSAKIWRVARRQFV--SSFAQQNNWVRSAKFSPNGKLVATASDDKSVRIYDV---DSGECVR 180
            |.|.:..||..:..:|.  ::.....|.|:|..:|.:|.|:||.|.||||.|::|   |..||..
  Fly    78 SFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSRSGGLLATCSRDKSVWIWEVAGDDEFECAA 142

  Fly   181 TFTEERAAPRQLAWHPWGNMLAVALGCNRIKIF---------DVSGSQLLQLYVVHSAPVNDVAF 236
            .........:::.|||..::||.|...|.||:|         |.:.:     ...|::.|..:.|
  Fly   143 VLNPHTQDVKRVVWHPTKDILASASYDNTIKMFAEEPIDNDWDCTAT-----LTSHTSTVWGIDF 202

  Fly   237 HPSGHFLLSGSDDRTIRILDLLEGRPIYTLTGHTDAVNAVAFSRDGDKFATGGSDRQLLVWQ--- 298
            ...|..|:|.|||.||:|.....       .|:|..|               .:..|..||:   
  Fly   203 DADGERLVSCSDDTTIKIWRAYH-------PGNTAGV---------------ATPDQQTVWKCVC 245

  Fly   299 --SNLHT---YDASQFEAKSALASSSCESSGVSSKQSEGSSTSKSNDLSIRIDPRQSLAYQL-SE 357
              |..|:   ||.|..:. :.|.:::|...|:  :..:.||.||         |.:....|: :|
  Fly   246 TVSGQHSRAIYDVSWCKL-TGLIATACGDDGI--RIFKESSDSK---------PDEPTFEQITAE 298

  Fly   358 ENFQVLDVS------IESGSDLCSCS 377
            |.....||:      :.:| .|.|||
  Fly   299 EGAHDQDVNSVQWNPVVAG-QLISCS 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Poc1NP_001261799.1 WD40 <7..298 CDD:441893 71/255 (28%)
WD40 repeat 22..58 CDD:293791
WD40 repeat 63..99 CDD:293791 15/35 (43%)
WD40 repeat 106..140 CDD:293791 8/35 (23%)
WD40 repeat 147..183 CDD:293791 17/38 (45%)
WD40 repeat 189..224 CDD:293791 11/43 (26%)
WD40 repeat 231..254 CDD:293791 10/22 (45%)
WD40 repeat 273..297 CDD:293791 2/23 (9%)
Ciao1NP_610996.1 WD40 6..332 CDD:238121 95/351 (27%)
WD40 repeat 17..57 CDD:293791 15/39 (38%)
WD40 repeat 63..101 CDD:293791 8/37 (22%)
WD40 repeat 106..145 CDD:293791 17/38 (45%)
WD40 repeat 152..191 CDD:293791 11/43 (26%)
WD40 repeat 197..248 CDD:293791 17/72 (24%)
WD40 repeat 255..299 CDD:293791 12/55 (22%)
WD40 repeat 306..331 CDD:293791 6/19 (32%)
Blue background indicates that the domain is not in the aligned region.

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