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Protein Alignment Poc1 and CG3436

DIOPT Version :9

Sequence 1:	NP_001261799.1	Gene:	Poc1 / 39502	FlyBaseID:	FBgn0036354	Length:	403	Species:	Drosophila melanogaster
Sequence 2:	NP_001285543.1	Gene:	CG3436 / 33180	FlyBaseID:	FBgn0031229	Length:	347	Species:	Drosophila melanogaster

Alignment Length:	258	Identity:	77/258 - (29%)
Similarity:	125/258 - (48%)	Gaps:	18/258 - (6%)

- Green bases have known domain annotations that are detailed below.

  Fly    15 TGHSGGITQLRFGPDGAQIATSSTDSTVILWNLNQAARCIRFASHSAPVNGVAWSPKG-NLVASA 78
            :||||.:.:..|.|||:.|.|.|||.|:..|::....|..||..|...||.|..|.:| .|:.|.
  Fly    95 SGHSGAVMEAHFTPDGSHIFTCSTDKTLAFWDIATGQRQRRFKGHGNFVNSVQGSRRGQQLLCSG 159

  Fly    79 GHDRTVKIWEPKLRGVSGEFVAHSK----AVRSVDFDSTGHLMLTASDDKSAKIWRVARRQFVSS 139
            ..|||:|||:.:.:     ..||:.    .|.:|.|..||..:::...|...|||.:.::..:..
  Fly   160 SDDRTIKIWDARKK-----HAAHTLESPFQVTAVCFGDTGEQVISGGIDNEVKIWDIRKQAVLHH 219

  Fly   140 FAQQNNWVRSAKFSPNGKLVATASDDKSVRIYDV---DSGE-CVRTFT-EERAAPRQL---AWHP 196
            ....::.:.....||.|..:.|.:.|.::|::||   ..|| ||:.|. .:....:.|   ||.|
  Fly   220 LRGHSDTITGMSLSPEGDFILTNAMDNTLRVWDVRPYAPGERCVKVFQGHQHNFEKNLLRCAWSP 284

  Fly   197 WGNMLAVALGCNRIKIFDVSGSQLLQLYVVHSAPVNDVAFHPSGHFLLSGSDDRTIRILDLLE 259
            ..:.:........:.|:||:..::|.....|:..||.|.|.|....:||||.|:|:.:.::.|
  Fly   285 GSDKITSGSADRHVYIWDVNTRRILYKLPGHNGSVNAVDFSPKEPLILSGSSDKTLYLGEIDE 347

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.