DRSC/TRiP Functional Genomics Resources

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Protein Alignment Poc1 and Wdr5b

DIOPT Version :10

Sequence 1:NP_001261799.1 Gene:Poc1 / 39502 FlyBaseID:FBgn0036354 Length:403 Species:Drosophila melanogaster
Sequence 2:NP_001019937.1 Gene:Wdr5b / 303907 RGDID:1308567 Length:328 Species:Rattus norvegicus


Alignment Length:347 Identity:94/347 - (27%)
Similarity:166/347 - (47%) Gaps:63/347 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 ALERHFTGHSGGITQLRFGPDGAQIATSSTDSTVILWNLNQAARCIR-FASHSAPVNGVAWSPKG 72
            ||.....|||..|:.::|.|:|..:|:|:.|:.:|:|.... .:|.: ...||..::.||||...
  Rat    30 ALRLTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYD-GKCKKTLYGHSLEISDVAWSSDS 93

  Fly    73 NLVASAGHDRTVKIWEPK----LRGVSGEFVAHSKAVRSVDFDSTGHLMLTASDDKSAKIWRVAR 133
            :.:.||..|:|:|:|:.:    |:.:.|    ||..|...||:...:|:::.|.|:|.|||.|..
  Rat    94 SRLVSASDDKTLKLWDVRSGKCLKTLKG----HSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKT 154

  Fly   134 RQFVSSFAQQNNWVRSAKFSPNGKLVATASDDKSVRIYDVDSGECVRTFTEERAAPRQLAWHPWG 198
            .:.:.:.:..::.:.:..|..||.|:.:.|.|...||:|..||:|:||..:|            |
  Rat   155 GKCLKTLSAHSDPISAVHFHCNGSLIVSGSYDGLCRIWDAASGQCLRTLADE------------G 207

  Fly   199 NMLAVALGCNRIKIFDVSGSQLLQLYVVHSAPVNDVAFHPSGHFLLSGSDDRTIRILDLLEGRPI 263
            |                             .||:.|.|.|:|.::|:.:.|.|:::.|...||.:
  Rat   208 N-----------------------------PPVSFVKFSPNGKYILTATLDSTLKLWDYSRGRCL 243

  Fly   264 YTLTGHTDAVNAV--AFSRDGDKFATGGS-DRQLLVWQSNLHTYDASQ-FEAKS-ALASSSCESS 323
            .|.|||.:....:  :||..|.|:...|| |..:.:|  ||.|.:..| .:..: .:.|::|..:
  Rat   244 KTYTGHKNEKYCIFASFSVTGRKWVVSGSEDNMVYIW--NLQTKEIVQRLQGHTDVVISAACHPT 306

  Fly   324 GVSSKQSEGSSTSKSNDLSIRI 345
                 ::..:|.:..||.:|:|
  Rat   307 -----ENIIASAALENDKTIKI 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Poc1NP_001261799.1 WD40 <7..298 CDD:441893 82/296 (28%)
WD40 repeat 22..58 CDD:293791 9/36 (25%)
WD40 repeat 63..99 CDD:293791 12/39 (31%)
WD40 repeat 106..140 CDD:293791 10/33 (30%)
WD40 repeat 147..183 CDD:293791 14/35 (40%)
WD40 repeat 189..224 CDD:293791 2/34 (6%)
WD40 repeat 231..254 CDD:293791 8/22 (36%)
WD40 repeat 273..297 CDD:293791 7/26 (27%)
Wdr5bNP_001019937.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..23
WD40 <30..327 CDD:441893 94/347 (27%)
WD 1 37..76 13/39 (33%)
WD40 repeat 42..79 CDD:293791 10/37 (27%)
WD 2 79..120 13/40 (33%)
WD40 repeat 85..121 CDD:293791 11/35 (31%)
WD 3 122..162 13/39 (33%)
WD40 repeat 126..162 CDD:293791 11/35 (31%)
WD 4 163..202 12/38 (32%)
WD40 repeat 169..204 CDD:293791 14/34 (41%)
DDB1-binding motif 186..190 1/3 (33%)
WD 5 206..247 16/81 (20%)
WD40 repeat 211..247 CDD:293791 12/35 (34%)
WD 6 250..290 11/41 (27%)
WD40 repeat 255..292 CDD:293791 12/38 (32%)
WD 7 293..328 7/36 (19%)
WD40 repeat 298..324 CDD:293791 7/31 (23%)
Blue background indicates that the domain is not in the aligned region.

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