DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Poc1 and FBXW8

DIOPT Version :9

Sequence 1:NP_001261799.1 Gene:Poc1 / 39502 FlyBaseID:FBgn0036354 Length:403 Species:Drosophila melanogaster
Sequence 2:XP_016874665.1 Gene:FBXW8 / 26259 HGNCID:13597 Length:599 Species:Homo sapiens


Alignment Length:427 Identity:83/427 - (19%)
Similarity:154/427 - (36%) Gaps:86/427 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 RDPALERHFTGHSGGITQLRFGPDGAQIATSSTDSTVI---------LWNLNQAARCIRFASHSA 61
            ::..|..::....|.:::|...||.......|.|..||         :|:.........|.....
Human   188 KEHMLRTNWKNRKGAVSELEHVPDTVLCDVHSHDGVVIAGYTSGDVRVWDTRTWDYVAPFLESED 252

  Fly    62 PVNGVAWSP-------KGNLVASAGHDRTVKIWEPKLRGVSGEFVAHSKAVRSVDFDSTGHLMLT 119
            ..:.....|       ..:|..:|..|..:.||:  ||  :|::..|     ..:.|:....:..
Human   253 EEDEPGMQPNVSFVRINSSLAVAAYEDGFLNIWD--LR--TGKYPVH-----RFEHDARIQALAL 308

  Fly   120 ASDDKSAK----------------IWRVARRQFVSSFAQQNNWVRSAKFSPNGKLVATASDDKSV 168
            :.||.:..                .|::|....|....|....|...:..|  ..||.|.|    
Human   309 SQDDATVATASAFDVVMLSPNEEGYWQIAAEFEVPKLVQYLEIVPETRRYP--VAVAAAGD---- 367

  Fly   169 RIYDVDSGECVRTFTEERAAP--------RQLAWHPWGNMLAVALGCNRIKIFDV-SGSQLLQL- 223
            .:|.:.:.:..||.......|        .|:|:...|  |......::|.::.: :|.:||:| 
Human   368 LMYLLKAEDSARTLLYAHGPPVTCLDVSANQVAFGVQG--LGWVYEGSKILVYSLEAGRRLLKLG 430

  Fly   224 YVVHSAPVNDVAFHPSGHFLLSGSDDRTIRILDLLEGRPIYTLTGHTDAVNAVAFSRDGDKFATG 288
            .|:......:::..|. :.::||:.|..:||.||..|....:|:.|...|:||  ..|..|..:|
Human   431 NVLRDFTCVNLSDSPP-NLMVSGNMDGRVRIHDLRSGNIALSLSAHQLRVSAV--QMDDWKIVSG 492

  Fly   289 GSDRQLLVWQSNL----------HTYDASQFEAKSALASSSCESSGVSSKQSEGSSTSKSNDLSI 343
            |.:..:.||...:          |......|.:.|.:.::....:.:.:...:..:|.:.:...|
Human   493 GEEGLVSVWDYRMNQKLWEVYSGHPVQHISFSSHSLITANVPYQTVMRNADLDSFTTHRRHRGLI 557

  Fly   344 RIDPRQSLAYQLSEENFQVLDVSIESGSDLC--SCSA 378
            |       ||:     |.|..::.:|...:|  ||.|
Human   558 R-------AYE-----FAVDQLAFQSPLPVCRSSCDA 582

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Poc1NP_001261799.1 WD40 10..298 CDD:238121 67/329 (20%)
WD40 14..388 CDD:225201 82/419 (20%)
WD40 repeat 22..58 CDD:293791 9/44 (20%)
WD40 repeat 63..99 CDD:293791 9/42 (21%)
WD40 repeat 106..140 CDD:293791 6/49 (12%)
WD40 repeat 147..183 CDD:293791 9/35 (26%)
WD40 repeat 189..224 CDD:293791 10/44 (23%)
WD40 repeat 231..254 CDD:293791 4/22 (18%)
WD40 repeat 273..297 CDD:293791 7/23 (30%)
FBXW8XP_016874665.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR44019
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.