DRSC/TRiP Functional Genomics Resources

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Protein Alignment Poc1 and Apaf1

DIOPT Version :9

Sequence 1:NP_001261799.1 Gene:Poc1 / 39502 FlyBaseID:FBgn0036354 Length:403 Species:Drosophila melanogaster
Sequence 2:NP_001036023.1 Gene:Apaf1 / 11783 MGIID:1306796 Length:1249 Species:Mus musculus


Alignment Length:402 Identity:89/402 - (22%)
Similarity:170/402 - (42%) Gaps:44/402 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 HSGGITQLRFGPDGAQIATSSTDSTVILWNLNQAARCIRFASHSAPVNGVAWSPKGNLVASAGHD 81
            |:..:....|..||.:||:...|.|:.::......:.:...:|...|...|:|...:.:|:...|
Mouse   614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSAD 678

  Fly    82 RTVKIWEPKLRGVSGEFVAHSKAVRSVDF-DSTGHLML-TASDDKSAKIWRVARRQFVSSFAQQN 144
            :.||||:.....:...:..||:.|....| :.:.||:| |.|:|...|:|.:.:::..::.....
Mouse   679 KKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT 743

  Fly   145 NWVRSAKFSPNGKLVATASDDKSVRIYDVDSG------ECVRTFTEERAAPRQL-------AWHP 196
            |.|...:|||:.:|:|:.|.|.::|::||.|.      ...|.|......|..:       :|..
Mouse   744 NSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA 808

  Fly   197 WGNMLAVALGCNRIKIFDVSGSQLL-QLYVVHSAPVNDVAFHPSGHFLLSGSDDRTIRILDLLEG 260
            .|:.:.|| ..|::.:||:..|.|| :::..|.:.:....|.|..|..:.......:.:.::...
Mouse   809 DGDKIIVA-AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR 872

  Fly   261 RPIYTLTGHTDAVNAVAFSRDGDKFATGGSDRQLLVWQSNLHTYDASQFEAKSALASSSCESSGV 325
            ..:....||...|:.|.||.||..|.|...|:.:.||::                 ...|::|.:
Mouse   873 LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET-----------------KKVCKNSAI 920

  Fly   326 SSKQSEGSSTSKSNDLSIRIDPRQSLAYQLSEENFQVLDVSIESGSDLCSCSARLDEIS------ 384
            ..||.......::..:.:.:|..:.|  ||.......:|...|:....|..|..|:.::      
Mouse   921 VLKQEIDVVFQENETMVLAVDNIRGL--QLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDG 983

  Fly   385 --KLLDSIDERV 394
              |:::..:.||
Mouse   984 AIKIIELPNNRV 995

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Poc1NP_001261799.1 WD40 10..298 CDD:238121 72/296 (24%)
WD40 14..388 CDD:225201 87/394 (22%)
WD40 repeat 22..58 CDD:293791 7/35 (20%)
WD40 repeat 63..99 CDD:293791 9/35 (26%)
WD40 repeat 106..140 CDD:293791 9/35 (26%)
WD40 repeat 147..183 CDD:293791 13/41 (32%)
WD40 repeat 189..224 CDD:293791 11/42 (26%)
WD40 repeat 231..254 CDD:293791 3/22 (14%)
WD40 repeat 273..297 CDD:293791 9/23 (39%)
Apaf1NP_001036023.1 CARD_APAF1 7..92 CDD:260034
NB-ARC 129..374 CDD:395745
APAF1_C 453..587 CDD:407760
WD40 607..910 CDD:238121 72/296 (24%)
WD 1-1. /evidence=ECO:0000255|PROSITE-ProRule:PRU00221, ECO:0000269|PubMed:21827944 613..652 8/37 (22%)
WD40 repeat 623..655 CDD:293791 7/31 (23%)
WD 1-2. /evidence=ECO:0000255|PROSITE-ProRule:PRU00221, ECO:0000269|PubMed:21827944 655..694 10/38 (26%)
WD40 repeat 661..697 CDD:293791 8/35 (23%)
WD 1-3. /evidence=ECO:0000255|PROSITE-ProRule:PRU00221, ECO:0000269|PubMed:21827944 697..738 12/40 (30%)
WD40 repeat 702..740 CDD:293791 10/37 (27%)
WD 1-4. /evidence=ECO:0000255|PROSITE-ProRule:PRU00221, ECO:0000269|PubMed:21827944 741..780 13/38 (34%)
WD40 repeat 747..789 CDD:293791 13/41 (32%)
WD 1-5. /evidence=ECO:0000255|PROSITE-ProRule:PRU00221, ECO:0000269|PubMed:21827944 796..837 10/41 (24%)
WD40 repeat 801..837 CDD:293791 10/36 (28%)
WD 1-6. /evidence=ECO:0000255|PROSITE-ProRule:PRU00221, ECO:0000269|PubMed:21827944 838..877 4/38 (11%)
WD40 repeat 843..882 CDD:293791 4/38 (11%)
WD 1-7. /evidence=ECO:0000255|PROSITE-ProRule:PRU00221, ECO:0000269|PubMed:21827944 880..910 12/29 (41%)
WD40 repeat 885..909 CDD:293791 9/23 (39%)
Interpropeller linker 910..921 2/27 (7%)
WD 2-1. /evidence=ECO:0000255|PROSITE-ProRule:PRU00221, ECO:0000269|PubMed:21827944 922..958 6/37 (16%)
WD 2-2. /evidence=ECO:0000255|PROSITE-ProRule:PRU00221, ECO:0000269|PubMed:21827944 959..998 7/37 (19%)
WD40 961..1235 CDD:238121 7/35 (20%)
WD40 repeat 964..999 CDD:293791 6/32 (19%)
WD 2-3. /evidence=ECO:0000255|PROSITE-ProRule:PRU00221, ECO:0000269|PubMed:21827944 1001..1040
WD40 repeat 1006..1030 CDD:293791
WD 2-4. /evidence=ECO:0000255|PROSITE-ProRule:PRU00221, ECO:0000269|PubMed:21827944 1042..1080
WD40 repeat 1048..1082 CDD:293791
WD 2-5. /evidence=ECO:0000255|PROSITE-ProRule:PRU00221, ECO:0000269|PubMed:21827944 1083..1122
WD40 repeat 1089..1124 CDD:293791
WD 2-6. /evidence=ECO:0000255|PROSITE-ProRule:PRU00221, ECO:0000269|PubMed:21827944 1125..1164
WD40 repeat 1130..1174 CDD:293791
WD 2-7. /evidence=ECO:0000255|PROSITE-ProRule:PRU00221, ECO:0000269|PubMed:21827944 1176..1213
WD40 repeat 1181..1203 CDD:293791
WD 2-8. /evidence=ECO:0000255|PROSITE-ProRule:PRU00221, ECO:0000269|PubMed:21827944 1214..1249
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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