DRSC/TRiP Functional Genomics Resources

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Protein Alignment caps and LRRTM4

DIOPT Version :9

Sequence 1:NP_001303391.1 Gene:caps / 39493 FlyBaseID:FBgn0023095 Length:811 Species:Drosophila melanogaster
Sequence 2:NP_001317299.1 Gene:LRRTM4 / 80059 HGNCID:19411 Length:591 Species:Homo sapiens


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
capsNP_001303391.1 leucine-rich repeat 75..96 CDD:275380
LRR_8 96..155 CDD:290566
leucine-rich repeat 97..120 CDD:275380
leucine-rich repeat 121..144 CDD:275380
LRR_8 143..201 CDD:290566
leucine-rich repeat 145..168 CDD:275380
LRR_RI 147..397 CDD:238064
leucine-rich repeat 169..192 CDD:275380
leucine-rich repeat 193..217 CDD:275380
LRR_8 217..276 CDD:290566
leucine-rich repeat 218..241 CDD:275380
leucine-rich repeat 242..265 CDD:275380
LRR_8 265..321 CDD:290566
leucine-rich repeat 266..289 CDD:275380
leucine-rich repeat 290..313 CDD:275380
LRR_8 312..374 CDD:290566
leucine-rich repeat 314..335 CDD:275380
leucine-rich repeat 339..363 CDD:275380
LRRCT 395..445 CDD:214507
LRRTM4NP_001317299.1 leucine-rich repeat 44..62 CDD:275380
leucine-rich repeat 65..87 CDD:275380
LRR_RI <85..291 CDD:238064
LRR_8 87..146 CDD:290566
leucine-rich repeat 88..111 CDD:275380
leucine-rich repeat 112..135 CDD:275380
LRR_8 134..194 CDD:290566
leucine-rich repeat 136..159 CDD:275380
leucine-rich repeat 160..183 CDD:275380
leucine-rich repeat 184..207 CDD:275380
leucine-rich repeat 208..231 CDD:275380
LRR_8 231..290 CDD:290566
leucine-rich repeat 232..255 CDD:275380
leucine-rich repeat 256..279 CDD:275380
leucine-rich repeat 304..316 CDD:275378
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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