DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment caps and LRFN3

DIOPT Version :9

Sequence 1:NP_001303391.1 Gene:caps / 39493 FlyBaseID:FBgn0023095 Length:811 Species:Drosophila melanogaster
Sequence 2:NP_078785.1 Gene:LRFN3 / 79414 HGNCID:28370 Length:628 Species:Homo sapiens


Alignment Length:622 Identity:143/622 - (22%)
Similarity:197/622 - (31%) Gaps:223/622 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 MSLAPHLGQAFSLCLCLCLCLVLATLPVALGLANCPNGCECDDDT--LMVNC-GEGTLDVLPIAL 70
            |::.|       |.|||......::.|.:...:.||..|.|...:  |.|.| |.|.|.|.|   
Human     1 MAILP-------LLLCLLPLAPASSPPQSATPSPCPRRCRCQTQSLPLSVLCPGAGLLFVPP--- 55

  Fly    71 NPAIQRLVIKNNKLKTIDSSMQFYAQLTFLDLSFNDMLTIPERSFAYHAKLQELHLDHNKIGQVS 135
                                                                  .||..      
Human    56 ------------------------------------------------------SLDRR------ 60

  Fly   136 NKTFLGLSTISVLNLRGNLIAELEYRTFSPMVKLAELNLGQNRISHIDPHALDGLDNLRVLYLDD 200
                     .:.|.|..|.||.:..|..:.|..|..|:|.:|.|.|:...|...|..||.|:||.
Human    61 ---------AAELRLADNFIASVRRRDLANMTGLLHLSLSRNTIRHVAAGAFADLRALRALHLDG 116

  Fly   201 NTLTTVPGELTFQALHSLAELYLGTNSFMTIPGGAFQDLKGLTRLDLRGAGLHNISGDALKGLVS 265
            |.||:: ||...:.|.:|..|.|..|....:..||..|.                       ..:
Human   117 NRLTSL-GEGQLRGLVNLRHLILSNNQLAALAAGALDDC-----------------------AET 157

  Fly   266 LRFLDLSDNRLPAIPTAAFQRLGRLEQLNIGQNDFEVISSGAFSGLRELRHLELTGAQRLRRVES 330
            |..||||.|.|..:|..|..|||.:..|.:..|....:.:||||.|.:|..|::|.         
Human   158 LEDLDLSYNNLEQLPWEALGRLGNVNTLGLDHNLLASVPAGAFSRLHKLARLDMTS--------- 213

  Fly   331 GAFSGNTNLEHLNLSSNKQLNELSSIALGGLPHLSTVVLKANQLSSLDEGLVPWADLQTLDLSEN 395
                                |.|::|...  |..|.:.|.|....|....||       |....|
Human   214 --------------------NRLTTIPPD--PLFSRLPLLARPRGSPASALV-------LAFGGN 249

  Fly   396 PFECDCRLLWLRHLLVSRNASGQYAPVICAYPTALR--------------DLPLAHLAEPLLGCA 446
            |..|:|.|:|||.|....:...      ||.|.||.              :.|:.....|.|...
Human   250 PLHCNCELVWLRRLAREDDLEA------CASPPALGGRYFWAVGEEEFVCEPPVVTHRSPPLAVP 308

  Fly   447 HGAASKQAIIGILVVACAALITTLALVLYTCR------HRIREMLKGHSALGRKEREYQKTFSD- 504
            .|..             |||         .||      .|:|.:......||...|  .:.|.: 
Human   309 AGRP-------------AAL---------RCRAVGDPEPRVRWVSPQGRLLGNSSR--ARAFPNG 349

  Fly   505 --EEYMSRPPPGGGGVHPAAGGYPYIAGNS--RMIPVTELXLEAPPPPQLRGRGGGGGASTA--- 562
              |..::.  ||.||:      :..||.|:  ......||.:..||||||..       ||:   
Human   350 TLELLVTE--PGDGGI------FTCIAANAAGEATAAVELTVGPPPPPQLAN-------STSCDP 399

  Fly   563 --SGAVQQLQVPSAVDQASNSFAQLSHIHYMTNNGQQ 597
              .|....|..||    |:::.|:::.....|:.|.|
Human   400 PRDGDPDALTPPS----AASASAKVADTGPPTDRGVQ 432

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
capsNP_001303391.1 leucine-rich repeat 75..96 CDD:275380 0/20 (0%)
LRR_8 96..155 CDD:290566 5/58 (9%)
leucine-rich repeat 97..120 CDD:275380 0/22 (0%)
leucine-rich repeat 121..144 CDD:275380 2/22 (9%)
LRR_8 143..201 CDD:290566 20/57 (35%)
leucine-rich repeat 145..168 CDD:275380 7/22 (32%)
LRR_RI 147..397 CDD:238064 67/249 (27%)
leucine-rich repeat 169..192 CDD:275380 8/22 (36%)
leucine-rich repeat 193..217 CDD:275380 11/23 (48%)
LRR_8 217..276 CDD:290566 13/58 (22%)
leucine-rich repeat 218..241 CDD:275380 7/22 (32%)
leucine-rich repeat 242..265 CDD:275380 0/22 (0%)
LRR_8 265..321 CDD:290566 21/55 (38%)
leucine-rich repeat 266..289 CDD:275380 11/22 (50%)
leucine-rich repeat 290..313 CDD:275380 7/22 (32%)
LRR_8 312..374 CDD:290566 10/61 (16%)
leucine-rich repeat 314..335 CDD:275380 3/20 (15%)
leucine-rich repeat 339..363 CDD:275380 3/23 (13%)
LRRCT 395..445 CDD:214507 17/63 (27%)
LRFN3NP_078785.1 LRR_8 59..119 CDD:290566 21/74 (28%)
LRR 1 60..83 6/37 (16%)
LRR_RI <63..168 CDD:238064 39/128 (30%)
leucine-rich repeat 63..84 CDD:275380 7/20 (35%)
LRR 2 84..105 7/20 (35%)
leucine-rich repeat 85..108 CDD:275380 8/22 (36%)
LRR 3 108..129 10/21 (48%)
leucine-rich repeat 109..132 CDD:275380 11/23 (48%)
LRR 4 132..153 6/20 (30%)
leucine-rich repeat 133..157 CDD:275380 7/46 (15%)
LRR_8 157..216 CDD:290566 23/87 (26%)
LRR 5 157..178 9/20 (45%)
leucine-rich repeat 158..181 CDD:275380 11/22 (50%)
LRR 6 181..202 5/20 (25%)
leucine-rich repeat 182..205 CDD:275380 7/22 (32%)
LRR 7 205..226 7/51 (14%)
leucine-rich repeat 206..230 CDD:275380 8/54 (15%)
leucine-rich repeat 242..253 CDD:275378 5/17 (29%)
TPKR_C2 249..>281 CDD:301599 14/37 (38%)
IG_like 302..383 CDD:214653 24/112 (21%)
Ig 310..383 CDD:299845 22/104 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 382..430 15/58 (26%)
fn3 424..502 CDD:278470 3/9 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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