DRSC/TRiP Functional Genomics Resources

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Protein Alignment caps and lrrc4.1

DIOPT Version :9

Sequence 1:NP_001303391.1 Gene:caps / 39493 FlyBaseID:FBgn0023095 Length:811 Species:Drosophila melanogaster
Sequence 2:XP_005164844.1 Gene:lrrc4.1 / 565021 ZFINID:ZDB-GENE-041210-129 Length:858 Species:Danio rerio


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
capsNP_001303391.1 leucine-rich repeat 75..96 CDD:275380
LRR_8 96..155 CDD:290566
leucine-rich repeat 97..120 CDD:275380
leucine-rich repeat 121..144 CDD:275380
LRR_8 143..201 CDD:290566
leucine-rich repeat 145..168 CDD:275380
LRR_RI 147..397 CDD:238064
leucine-rich repeat 169..192 CDD:275380
leucine-rich repeat 193..217 CDD:275380
LRR_8 217..276 CDD:290566
leucine-rich repeat 218..241 CDD:275380
leucine-rich repeat 242..265 CDD:275380
LRR_8 265..321 CDD:290566
leucine-rich repeat 266..289 CDD:275380
leucine-rich repeat 290..313 CDD:275380
LRR_8 312..374 CDD:290566
leucine-rich repeat 314..335 CDD:275380
leucine-rich repeat 339..363 CDD:275380
LRRCT 395..445 CDD:214507
lrrc4.1XP_005164844.1 LRRNT 43..77 CDD:214470
leucine-rich repeat 54..73 CDD:275380
leucine-rich repeat 75..98 CDD:275380
LRR_8 76..133 CDD:290566
LRR_RI 93..323 CDD:238064
leucine-rich repeat 99..122 CDD:275380
LRR_8 121..206 CDD:290566
leucine-rich repeat 123..146 CDD:275380
leucine-rich repeat 147..170 CDD:275380
leucine-rich repeat 171..195 CDD:275380
leucine-rich repeat 196..218 CDD:275380
LRR_8 218..277 CDD:290566
leucine-rich repeat 219..242 CDD:275380
leucine-rich repeat 243..266 CDD:275380
leucine-rich repeat 267..288 CDD:275380
IG_like 361..443 CDD:214653
Ig 372..443 CDD:299845
STOP 616..799 CDD:283000
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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