DRSC/TRiP Functional Genomics Resources

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Protein Alignment caps and lrrn2

DIOPT Version :10

Sequence 1:NP_001303391.1 Gene:caps / 39493 FlyBaseID:FBgn0023095 Length:811 Species:Drosophila melanogaster
Sequence 2:XP_021335503.2 Gene:lrrn2 / 558051 ZFINID:ZDB-GENE-141212-289 Length:722 Species:Danio rerio


Alignment Length:665 Identity:161/665 - (24%)
Similarity:252/665 - (37%) Gaps:140/665 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 LCLCLCLCLVLATLPVALGLANCPNGCECD-----------DDTLMVNCGEGTLDVLPIALNPAI 74
            |.|.:...||:.::|..:   :||:.|.|.           .:...|:|.:..|..||.:|....
Zfish    15 LLLGVTSSLVIQSMPWRV---SCPHQCVCQIKPWYSPQSVYREAPTVDCNDLLLIQLPTSLPQET 76

  Fly    75 QRLVIKNNKLKTID-SSMQFYAQLTFLDLSFNDMLTIPERSFAYHAKLQELHLDHNKIGQVSNKT 138
            |.|.:::|.:.::| |.:|....||.||||.|...:...........|..||::.|::..:....
Zfish    77 QTLRLQSNLISSVDQSELQGLVNLTELDLSHNSFTSTRNLRITDLPALLSLHMEENQLRHLPEAA 141

  Fly   139 FLGLSTISVLNLRGNLIAELEYRTFSPMVKLAELNLGQNRISHIDPHALDGLDNLRVLYLDDNTL 203
            |.|||                        .|.||.|..||:..|.|.|..|||.|..|:|:.|.|
Zfish   142 FFGLS------------------------NLQELYLNHNRLRSISPGAFKGLDRLLRLHLNSNRL 182

  Fly   204 TTVPGELTFQALHSLAELYLGTNSFMTIPGGAFQDLKGLTRLDLRGAGLHNISGDALKGLVSLRF 268
            ..: ....|.||..|..|.:|.|....|....|:.|..|..|.|.|.||..||..||:||.:|..
Zfish   183 VVI-DRRWFHALQQLEVLMIGGNPVEIIQDLNFKPLGSLRSLVLAGMGLREISERALEGLQNLES 246

  Fly   269 LDLSDNRLPAIPTAAFQRLGRLEQLNIGQNDFEVISSGAFSGLRELRHLELTGAQRLRRVESGAF 333
            :...||.|..:|..|.|:|..|:.|::.:|..:::..|.|..:..|:.|.|...:.|..:|..|.
Zfish   247 ISFYDNSLIKVPKEALQKLPGLKFLDLNKNPIQLVQRGDFRNMLHLKELGLNNMEELISIEHSAM 311

  Fly   334 SGNTNLEHLNLSSNKQLNELSSIALGGLPHLSTVVLKANQLSSLDEGLV-PWADLQTLDLSENPF 397
            .....|..|.:::|.:|:.:...|...|..:.:::|.:|.||:|....| ....||.:.|..||.
Zfish   312 ENLPELTKLEITNNPRLSYIHPQAFQKLLSMESLMLNSNALSALHSQTVRSLPSLQEISLHSNPI 376

  Fly   398 ECDCRLLWLRHLLVSRNASGQYAPV--------ICAYPTAL-----RDLPLAHLAE---PLLG-- 444
            .|||.:.|:        .:....||        .|:.|..|     :::....:|:   ||:.  
Zfish   377 RCDCLIRWV--------GADNDKPVRFIEPQSTFCSEPPELKARRVKEVSFREMADSCLPLIAPS 433

  Fly   445 -------CAHGAASKQAIIGILVVACAALITTLALVLYTCRHRIREMLKGHSALGRKEREYQKTF 502
                   ..||        ..:.:.|.||......:.:.....:|  |...|:.||.:...:.|.
Zfish   434 TFPSYIEVKHG--------DNVALHCRALAEPEPNIYWVIPQGVR--LTPSSSYGRYQVLTEGTL 488

  Fly   503 -----SDEEYMSRPPPGGGGVHPAAGGYPYIAGNSRMIPVTELXLEAPPPPQLRGRGGGGGASTA 562
                 :.||               ||.|..:|.|........|.|:......:|||         
Zfish   489 QIFGVTAEE---------------AGFYTCVAQNLVGADTRSLTLQVEGSNLIRGR--------- 529

  Fly   563 SGAVQQLQVPSAVDQASNSFAQLS----------HIHYMTNNGQQQQAQQQQSTSKMHHSQQDMR 617
               .|:.:....|......:|.||          |:.::.|...:.            |.:...|
Zfish   530 ---TQRREDSFEVQDVKERYALLSWQASHNVPTAHLSWVANGSLED------------HHRHSTR 579

  Fly   618 LLACNGGKPLNATSL 632
            :||  |.:..|.|.|
Zfish   580 ILA--GTRRFNLTRL 592

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
capsNP_001303391.1 leucine-rich repeat 75..96 CDD:275380 6/21 (29%)
LRR_8 96..155 CDD:404697 15/58 (26%)
leucine-rich repeat 97..120 CDD:275380 7/22 (32%)
leucine-rich repeat 121..144 CDD:275380 7/22 (32%)
LRR 135..>398 CDD:443914 79/263 (30%)
leucine-rich repeat 145..168 CDD:275380 0/22 (0%)
leucine-rich repeat 169..192 CDD:275380 11/22 (50%)
leucine-rich repeat 193..217 CDD:275380 8/23 (35%)
leucine-rich repeat 218..241 CDD:275380 7/22 (32%)
leucine-rich repeat 242..265 CDD:275380 12/22 (55%)
leucine-rich repeat 266..289 CDD:275380 8/22 (36%)
leucine-rich repeat 290..313 CDD:275380 5/22 (23%)
leucine-rich repeat 314..335 CDD:275380 6/20 (30%)
leucine-rich repeat 339..363 CDD:275380 6/23 (26%)
LRRCT 395..445 CDD:214507 14/74 (19%)
lrrn2XP_021335503.2 None

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