DRSC/TRiP Functional Genomics Resources

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Protein Alignment caps and lrrc4ca

DIOPT Version :10

Sequence 1:NP_001303391.1 Gene:caps / 39493 FlyBaseID:FBgn0023095 Length:811 Species:Drosophila melanogaster
Sequence 2:NP_001018583.1 Gene:lrrc4ca / 553785 ZFINID:ZDB-GENE-050522-533 Length:647 Species:Danio rerio


Alignment Length:802 Identity:193/802 - (24%)
Similarity:265/802 - (33%) Gaps:282/802 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 ITMSL------APHLGQAFSLCLCLCLCLVLATLPVALGLA---NCPNGCECDDDTLMVNC-GEG 61
            :|.||      .|...:|.|..| ..|.|.|..|.|| ||.   .||:.|.|.:....|.| ..|
Zfish     5 MTSSLMQQTMRGPRWNRALSDPL-FVLSLALQLLVVA-GLVRAQTCPSVCSCSNQFSKVICTRRG 67

  Fly    62 TLDVLPIALNPAIQRLVIKNNKLKTIDSSMQFYAQLTFLDLSFNDMLTIPERSFAYHAKLQELHL 126
            ..||                                             |:              
Zfish    68 LRDV---------------------------------------------PD-------------- 73

  Fly   127 DHNKIGQVSNKTFLGLST-ISVLNLRGNLIAELEYRTFSPMVKLAELNLGQNRISHIDPHALDGL 190
                          |:|| ...|||:.|||..::..:|..:..|..|.|.:|.|.:|:..|.:||
Zfish    74 --------------GISTNTRYLNLQENLIQVIKVDSFKHLRHLEILQLSKNHIRNIEIGAFNGL 124

  Fly   191 DNLRVLYLDDNTLTTVPGELTFQALHSLAELYLGTNSFMTIPGGAFQDLKGLTRLDLRGAG---- 251
            .||..|.|.||.|||:|.. .|:.|..|.||:|..|...:||..||..:..|.||||   |    
Zfish   125 ANLNTLELFDNRLTTIPNG-AFEYLSKLKELWLRNNPIESIPSYAFNRVPSLRRLDL---GELKR 185

  Fly   252 LHNISGDALKGLVSLRFLDLSDNRLPAIPTAAFQRLGRLEQLNIGQNDFEVISSGAFSGLRELRH 316
            |..||..|.:||.:||:|:|....|..||...  .|.||::|.:..|...:|..|:|.||..|:.
Zfish   186 LSYISEGAFEGLSNLRYLNLGMCNLKEIPNLI--PLVRLDELEMSGNQLSIIRPGSFKGLVHLQK 248

  Fly   317 LELTGAQRLRRVESGAFSGNTNLEHLNLSSNKQLNELSSIALGGLPHLSTVVLKANQLSSLDEGL 381
            |.:..|| ::.:|..||....:|..|||:.|.         |..|||               :..
Zfish   249 LWMMHAQ-IQTIERNAFDDLQSLVELNLAHNN---------LTLLPH---------------DLF 288

  Fly   382 VPWADLQTLDLSENPFECDCRLLWLRHLL---VSRNAS----------------GQ--------Y 419
            .|...|:.:.|..||:.|:|.:|||...|   |..|.|                |:        |
Zfish   289 TPLHHLERVHLHHNPWNCNCDILWLSWWLKEMVPANTSCCARCSSPTSHKGRYIGELDQNYFHCY 353

  Fly   420 APVICAYPTALRDLPLAHLAEPLLGC------------------AHGAASKQAIIGILVVACAAL 466
            ||||...|.   ||.:.......|.|                  .|||..    |.|.|:....|
Zfish   354 APVIVEPPA---DLNVTEGMAAELKCRANSLTSVSWITPNGSIMTHGAYK----IRISVLNDGTL 411

  Fly   467 ----ITTLALVLYTCRHRIREMLKGHSALGRKEREYQKTFSDEEYMSRPPPGGGGVHPAAGGYPY 527
                :|......|||       :..:|| |..........|..|..|               :.|
Zfish   412 NFTNVTMQDTGTYTC-------MVSNSA-GNTTASATLNVSSTENSS---------------FSY 453

  Fly   528 IAGNSRMIPVTELXLEAPPP---PQLRGRGGGGGASTASGAVQQLQVPSAVDQASNSFAQLS--- 586
            ..      .||....||||.   |.::.:.|    .|.|..:.:...||.....:.:...||   
Zfish   454 FT------TVTVETTEAPPDEGHPTVQQKNG----PTPSSGIWETLPPSFTTTTTTARTPLSTKA 508

  Fly   587 ----HIHYMT--NNGQQQQAQQQQSTSKM-------------------------HHSQQDMRLLA 620
                :...:|  ::|......:...|:|:                         ||.|       
Zfish   509 TDKTYTIPVTAQSDGSLNTLDEVMKTTKIIIGCFVAITLMAAVMLIIFYKMRKQHHQQ------- 566

  Fly   621 CNGGKPLNATSLPRHRPPVVQESTL-------SHYSQPLANGIRLTQDHFNHNQNQSHNQHYGGV 678
             |...|..|..:..     |.|..:       ||.:.|     .|..:|.||     :|     .
Zfish   567 -NHHAPTRAIEIIN-----VDEDCMTGGPAMESHLALP-----PLDHEHLNH-----YN-----A 610

  Fly   679 YAKPCDAMSEPGYIHNNSHYSL 700
            |....:..|....||:::|..|
Zfish   611 YKTAYNHASTINSIHSSAHEPL 632

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
capsNP_001303391.1 leucine-rich repeat 75..96 CDD:275380 0/20 (0%)
LRR_8 96..155 CDD:404697 8/59 (14%)
leucine-rich repeat 97..120 CDD:275380 1/22 (5%)
leucine-rich repeat 121..144 CDD:275380 1/22 (5%)
LRR 135..>398 CDD:443914 90/267 (34%)
leucine-rich repeat 145..168 CDD:275380 7/22 (32%)
leucine-rich repeat 169..192 CDD:275380 9/22 (41%)
leucine-rich repeat 193..217 CDD:275380 11/23 (48%)
leucine-rich repeat 218..241 CDD:275380 9/22 (41%)
leucine-rich repeat 242..265 CDD:275380 12/26 (46%)
leucine-rich repeat 266..289 CDD:275380 8/22 (36%)
leucine-rich repeat 290..313 CDD:275380 8/22 (36%)
leucine-rich repeat 314..335 CDD:275380 7/20 (35%)
leucine-rich repeat 339..363 CDD:275380 7/23 (30%)
LRRCT 395..445 CDD:214507 21/76 (28%)
lrrc4caNP_001018583.1 LRRNT 48..81 CDD:214470 13/105 (12%)
LRR <77..326 CDD:443914 96/279 (34%)
leucine-rich repeat 79..102 CDD:275380 7/22 (32%)
leucine-rich repeat 103..126 CDD:275380 9/22 (41%)
leucine-rich repeat 127..150 CDD:275380 11/23 (48%)
leucine-rich repeat 151..174 CDD:275380 9/22 (41%)
leucine-rich repeat 175..199 CDD:275380 12/26 (46%)
leucine-rich repeat 200..221 CDD:275380 8/22 (36%)
leucine-rich repeat 222..245 CDD:275380 8/22 (36%)
leucine-rich repeat 246..269 CDD:275380 7/23 (30%)
leucine-rich repeat 270..291 CDD:275380 9/44 (20%)
IG_like 361..443 CDD:214653 19/96 (20%)
Ig strand B 372..376 CDD:409353 1/3 (33%)
Ig strand C 383..387 CDD:409353 0/3 (0%)
Ig strand E 409..413 CDD:409353 1/3 (33%)
Ig strand F 423..428 CDD:409353 3/11 (27%)
Ig strand G 436..439 CDD:409353 0/2 (0%)

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