DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment caps and Lrrn1

DIOPT Version :9

Sequence 1:NP_001303391.1 Gene:caps / 39493 FlyBaseID:FBgn0023095 Length:811 Species:Drosophila melanogaster
Sequence 2:NP_001032440.1 Gene:Lrrn1 / 500280 RGDID:1564145 Length:716 Species:Rattus norvegicus


Alignment Length:408 Identity:107/408 - (26%)
Similarity:181/408 - (44%) Gaps:48/408 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 ANCPNGCECD-----------DDTLMVNCGEGTLDVLPIALNPAIQRLVIKNNKL-KTIDSSMQF 93
            :.||..|.|:           .:...|:|.:..|..:|..|:...|.|::::|.: ||:|...|.
  Rat    30 SECPQLCVCEIRPWFTPQSTYREATTVDCNDLRLTRIPGNLSSDTQVLLLQSNNIAKTVDELQQL 94

  Fly    94 YAQLTFLDLSFNDMLTIPERSFAYHAKLQELHLDHNKIGQVSNKTFLGLSTISVLNLRGNLIAEL 158
            : .||.||.|.|:...|.|...|...:|..|||:.|:|.::::.....||.:..|.:..|.|:.:
  Rat    95 F-NLTELDFSQNNFTNIKEVGLANLTQLTTLHLEENQISEMTDYCLQDLSNLQELYINHNQISSI 158

  Fly   159 EYRTFSPMVKLAELNLGQNRISHIDPHALDGLDNLRVLYLDDNTLTTVPGELTFQALHSLAELYL 223
            ....||.:..|..|:|..|::..||....|...||.:|.:.:|.:..:                |
  Rat   159 SANAFSGLKNLLRLHLNSNKLKVIDSRWFDSTPNLEILMIGENPVIGI----------------L 207

  Fly   224 GTNSFMTIPGGAFQDLKGLTRLDLRGAGLHNISGDALKGLVSLRFLDLSDNRLPAIPTAAFQRLG 288
            ..|         |:.|..|..|.|.|..|.:|.|:||.||.||..|...||:|..:|..|.|::.
  Rat   208 DMN---------FRPLSNLRSLVLAGMYLTDIPGNALVGLDSLESLSFYDNKLIKVPQLALQKVP 263

  Fly   289 RLEQLNIGQNDFEVISSGAFSGLRELRHLELTGAQRLRRVESGAFSGNTNLEHLNLSSNKQLNEL 353
            .|:.|::.:|....|..|.|..:..|:.|.:.....|..|:..|......|..|..::|.:|:.:
  Rat   264 NLKFLDLNKNPIHKIQEGDFKNMLRLKELGINNMGELVSVDRYALDNLPELTKLEATNNPKLSYI 328

  Fly   354 SSIALGGLPHLSTVVLKANQLSSLDEGLV-PWADLQTLDLSENPFECDCRLLWLRHLLVSRNASG 417
            ..:|...:|.|.:::|..|.|:::.:..| ...:|:.:.:..||..|||.:.|     ::.|.:.
  Rat   329 HRLAFRSVPALESLMLNNNALNAVYQKTVESLPNLREISIHSNPLRCDCVIHW-----INSNKTN 388

  Fly   418 ----QYAPVICAYPTALR 431
                :...:.||.|...|
  Rat   389 IRFMEPLSMFCAMPPEYR 406

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
capsNP_001303391.1 leucine-rich repeat 75..96 CDD:275380 7/21 (33%)
LRR_8 96..155 CDD:290566 19/58 (33%)
leucine-rich repeat 97..120 CDD:275380 9/22 (41%)
leucine-rich repeat 121..144 CDD:275380 7/22 (32%)
LRR_8 143..201 CDD:290566 16/57 (28%)
leucine-rich repeat 145..168 CDD:275380 5/22 (23%)
LRR_RI 147..397 CDD:238064 64/250 (26%)
leucine-rich repeat 169..192 CDD:275380 7/22 (32%)
leucine-rich repeat 193..217 CDD:275380 3/23 (13%)
LRR_8 217..276 CDD:290566 20/58 (34%)
leucine-rich repeat 218..241 CDD:275380 4/22 (18%)
leucine-rich repeat 242..265 CDD:275380 11/22 (50%)
LRR_8 265..321 CDD:290566 17/55 (31%)
leucine-rich repeat 266..289 CDD:275380 8/22 (36%)
leucine-rich repeat 290..313 CDD:275380 6/22 (27%)
LRR_8 312..374 CDD:290566 14/61 (23%)
leucine-rich repeat 314..335 CDD:275380 5/20 (25%)
leucine-rich repeat 339..363 CDD:275380 5/23 (22%)
LRRCT 395..445 CDD:214507 11/41 (27%)
Lrrn1NP_001032440.1 leucine-rich repeat 54..73 CDD:275380 5/18 (28%)
LRR <68..372 CDD:227223 88/329 (27%)
LRR 1 73..95 7/21 (33%)
leucine-rich repeat 74..96 CDD:275380 7/22 (32%)
LRR 2 96..117 8/20 (40%)
leucine-rich repeat 97..120 CDD:275380 9/22 (41%)
LRR 3 120..141 6/20 (30%)
leucine-rich repeat 121..144 CDD:275380 7/22 (32%)
LRR 4 144..165 4/20 (20%)
leucine-rich repeat 145..168 CDD:275380 5/22 (23%)
LRR 5 168..189 6/20 (30%)
leucine-rich repeat 169..192 CDD:275380 7/22 (32%)
LRR 6 192..213 7/45 (16%)
leucine-rich repeat 193..216 CDD:275380 7/47 (15%)
LRR 7 216..237 9/20 (45%)
leucine-rich repeat 217..240 CDD:275380 11/22 (50%)
LRR 8 240..261 8/20 (40%)
leucine-rich repeat 241..264 CDD:275380 8/22 (36%)
LRR 9 264..285 6/20 (30%)
leucine-rich repeat 265..288 CDD:275380 6/22 (27%)
leucine-rich repeat 289..313 CDD:275380 5/23 (22%)
leucine-rich repeat 314..335 CDD:275380 5/20 (25%)
leucine-rich repeat 339..362 CDD:275378 5/22 (23%)
leucine-rich repeat 363..375 CDD:275378 3/11 (27%)
LRRCT 371..419 CDD:214507 11/41 (27%)
I-set 429..516 CDD:400151
Ig strand A' 433..438 CDD:409353
Ig strand B 441..450 CDD:409353
Ig strand C 456..460 CDD:409353
Ig strand C' 463..465 CDD:409353
Ig strand D 478..481 CDD:409353
Ig strand E 482..487 CDD:409353
Ig strand F 495..503 CDD:409353
Ig strand G 506..516 CDD:409353
FN3 531..600 CDD:214495
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 691..716
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 161 1.000 Inparanoid score I4127
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm8997
orthoMCL 1 0.900 - - OOG6_103993
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.860

Return to query results.
Submit another query.