DRSC/TRiP Functional Genomics Resources

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Protein Alignment caps and Lrrtm4

DIOPT Version :9

Sequence 1:NP_001303391.1 Gene:caps / 39493 FlyBaseID:FBgn0023095 Length:811 Species:Drosophila melanogaster
Sequence 2:XP_017448300.1 Gene:Lrrtm4 / 500219 RGDID:1560707 Length:591 Species:Rattus norvegicus


Alignment Length:711 Identity:162/711 - (22%)
Similarity:246/711 - (34%) Gaps:183/711 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 GQAFSLCLCLCLCLVLATLPVALGLAN-CPNGCECDDDTLMVNCGEGTLDVLPIALNPAIQRLVI 79
            |.:..|.|...|.||:.|     |... ||..|.||..  :|.|.......:|..::...|.   
  Rat    12 GMSVLLVLFPTLLLVMLT-----GAQRACPKNCRCDGK--IVYCESHAFADIPENISGGSQG--- 66

  Fly    80 KNNKLKTIDSSMQFYAQLTFLDLSFNDMLTIPERSFAYHAKLQELHLDHNKIGQVSNKTFLGLST 144
                                |.|.||.:..:....||...:|..|:||||.|..|....|.|:..
  Rat    67 --------------------LSLRFNSIQKLKSNQFAGLNQLIWLYLDHNYISSVDEDAFQGIRR 111

  Fly   145 ISVLNLRGNLIAELEYRTFSPMVKLAELNLGQNRISHIDPHALDGLDNLRVLYLDDNTLTTVPGE 209
            :..|.|..|.|..|..:||.|:..|..|:|..|::..:......||..|.:|:|..|:|.|||..
  Rat   112 LKELILSSNKITYLHNKTFHPVPNLRNLDLSYNKLQTLQSEQFKGLRKLIILHLRSNSLKTVPIR 176

  Fly   210 LTFQALHSLAELYLGTNSFMTIPGGAFQDLKGLTRLDLRGAGLHNISGDALKGLVSLRFLDLSDN 274
            :                         |||.:.|..|||....|.::|.:|..||:.|:.|.|..|
  Rat   177 V-------------------------FQDCRNLDFLDLGYNRLRSLSRNAFAGLLKLKELHLEHN 216

  Fly   275 RLPAIPTAAFQRLGRLEQLNIGQNDFEVISSGAFSGLRELRHLELTGAQRLRRVESGAFSGNTNL 339
            :...|..|.|.||..|..:.:..|....:|.|.......|..|:|:| ..::.:|.|.|....||
  Rat   217 QFSKINFAHFPRLFNLRSIYLQWNRIRSVSQGLTWTWSSLHTLDLSG-NDIQAIEPGTFKCLPNL 280

  Fly   340 EHLNLSSNKQLNELSSIALGGLPHLSTVVLKANQLSSLDEGLVPWADLQTLDLSENPFECD---C 401
            :.|||.|||            |.::|...:.|            |..|.::.||.|.:||.   |
  Rat   281 QKLNLDSNK------------LTNVSQETVNA------------WISLISITLSGNMWECSRSIC 321

  Fly   402 RLL-WLRHLLVSRNASGQYAPVICAYPTALRDLPLAHLAEPLLGCAHGAASKQAIIGILVVACAA 465
            .|. ||::...::.::     :|||.|..::...::...|....|:                   
  Rat   322 PLFYWLKNFKGNKEST-----MICAGPKHIQGEKVSDAVETYNICS------------------- 362

  Fly   466 LITTLALVLYTCRHRIREMLKGHSALGRKEREYQKTFSDEEYMSRPPPGGGGVHPAAGGYPYIAG 530
                                           :.|...::..:::...|......|.    |.|. 
  Rat   363 -------------------------------DVQVVNTERSHLAPQTPQKPPFFPK----PTIF- 391

  Fly   531 NSRMIPVTELXLEAPPPPQLRGRG------------GGGGASTASGAVQQLQVPSAVDQASNSFA 583
            .|..||.|.. :...|..|:.|..            .|..|...|.|:..|.:..:..:...|..
  Rat   392 KSDAIPATLEAVSPSPGFQIPGTDHEYEHVSFHKIIAGSVALFLSVAMILLVIYVSWKRYPASMK 456

  Fly   584 QLSHIHYMTNNGQQQQAQQQQSTSKMHHSQQDMRL-------LACNGGKPLNAT-------SLPR 634
            ||.....|....::.:..::|..|.:.....|.:.       ::.||..|...|       .:|.
  Rat   457 QLQQHSLMKRRRKKARESERQMNSPLQEYYVDYKPTNSETMDISVNGSGPCTYTISGSRECEMPH 521

  Fly   635 HRPPVVQESTLSHYSQPLANGIRLTQDHFNHNQNQSHNQHYGGVYAKPCDAMS-EPGYIHN 694
            |..|:...|    |.||:   |...|.|    |....|:.|..|..:..|:.| |.|..|:
  Rat   522 HVKPLPYYS----YDQPV---IGYCQAH----QPLHINKAYEAVSIEQDDSPSLELGRDHS 571

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
capsNP_001303391.1 leucine-rich repeat 75..96 CDD:275380 1/20 (5%)
LRR_8 96..155 CDD:290566 19/58 (33%)
leucine-rich repeat 97..120 CDD:275380 6/22 (27%)
leucine-rich repeat 121..144 CDD:275380 10/22 (45%)
LRR_8 143..201 CDD:290566 17/57 (30%)
leucine-rich repeat 145..168 CDD:275380 8/22 (36%)
LRR_RI 147..397 CDD:238064 70/249 (28%)
leucine-rich repeat 169..192 CDD:275380 6/22 (27%)
leucine-rich repeat 193..217 CDD:275380 8/23 (35%)
LRR_8 217..276 CDD:290566 16/58 (28%)
leucine-rich repeat 218..241 CDD:275380 3/22 (14%)
leucine-rich repeat 242..265 CDD:275380 9/22 (41%)
LRR_8 265..321 CDD:290566 16/55 (29%)
leucine-rich repeat 266..289 CDD:275380 9/22 (41%)
leucine-rich repeat 290..313 CDD:275380 4/22 (18%)
LRR_8 312..374 CDD:290566 18/61 (30%)
leucine-rich repeat 314..335 CDD:275380 7/20 (35%)
leucine-rich repeat 339..363 CDD:275380 8/23 (35%)
LRRCT 395..445 CDD:214507 12/53 (23%)
Lrrtm4XP_017448300.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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