Sequence 1: | NP_001303391.1 | Gene: | caps / 39493 | FlyBaseID: | FBgn0023095 | Length: | 811 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_017448300.1 | Gene: | Lrrtm4 / 500219 | RGDID: | 1560707 | Length: | 591 | Species: | Rattus norvegicus |
Alignment Length: | 711 | Identity: | 162/711 - (22%) |
---|---|---|---|
Similarity: | 246/711 - (34%) | Gaps: | 183/711 - (25%) |
- Green bases have known domain annotations that are detailed below.
Fly 16 GQAFSLCLCLCLCLVLATLPVALGLAN-CPNGCECDDDTLMVNCGEGTLDVLPIALNPAIQRLVI 79
Fly 80 KNNKLKTIDSSMQFYAQLTFLDLSFNDMLTIPERSFAYHAKLQELHLDHNKIGQVSNKTFLGLST 144
Fly 145 ISVLNLRGNLIAELEYRTFSPMVKLAELNLGQNRISHIDPHALDGLDNLRVLYLDDNTLTTVPGE 209
Fly 210 LTFQALHSLAELYLGTNSFMTIPGGAFQDLKGLTRLDLRGAGLHNISGDALKGLVSLRFLDLSDN 274
Fly 275 RLPAIPTAAFQRLGRLEQLNIGQNDFEVISSGAFSGLRELRHLELTGAQRLRRVESGAFSGNTNL 339
Fly 340 EHLNLSSNKQLNELSSIALGGLPHLSTVVLKANQLSSLDEGLVPWADLQTLDLSENPFECD---C 401
Fly 402 RLL-WLRHLLVSRNASGQYAPVICAYPTALRDLPLAHLAEPLLGCAHGAASKQAIIGILVVACAA 465
Fly 466 LITTLALVLYTCRHRIREMLKGHSALGRKEREYQKTFSDEEYMSRPPPGGGGVHPAAGGYPYIAG 530
Fly 531 NSRMIPVTELXLEAPPPPQLRGRG------------GGGGASTASGAVQQLQVPSAVDQASNSFA 583
Fly 584 QLSHIHYMTNNGQQQQAQQQQSTSKMHHSQQDMRL-------LACNGGKPLNAT-------SLPR 634
Fly 635 HRPPVVQESTLSHYSQPLANGIRLTQDHFNHNQNQSHNQHYGGVYAKPCDAMS-EPGYIHN 694 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
caps | NP_001303391.1 | leucine-rich repeat | 75..96 | CDD:275380 | 1/20 (5%) |
LRR_8 | 96..155 | CDD:290566 | 19/58 (33%) | ||
leucine-rich repeat | 97..120 | CDD:275380 | 6/22 (27%) | ||
leucine-rich repeat | 121..144 | CDD:275380 | 10/22 (45%) | ||
LRR_8 | 143..201 | CDD:290566 | 17/57 (30%) | ||
leucine-rich repeat | 145..168 | CDD:275380 | 8/22 (36%) | ||
LRR_RI | 147..397 | CDD:238064 | 70/249 (28%) | ||
leucine-rich repeat | 169..192 | CDD:275380 | 6/22 (27%) | ||
leucine-rich repeat | 193..217 | CDD:275380 | 8/23 (35%) | ||
LRR_8 | 217..276 | CDD:290566 | 16/58 (28%) | ||
leucine-rich repeat | 218..241 | CDD:275380 | 3/22 (14%) | ||
leucine-rich repeat | 242..265 | CDD:275380 | 9/22 (41%) | ||
LRR_8 | 265..321 | CDD:290566 | 16/55 (29%) | ||
leucine-rich repeat | 266..289 | CDD:275380 | 9/22 (41%) | ||
leucine-rich repeat | 290..313 | CDD:275380 | 4/22 (18%) | ||
LRR_8 | 312..374 | CDD:290566 | 18/61 (30%) | ||
leucine-rich repeat | 314..335 | CDD:275380 | 7/20 (35%) | ||
leucine-rich repeat | 339..363 | CDD:275380 | 8/23 (35%) | ||
LRRCT | 395..445 | CDD:214507 | 12/53 (23%) | ||
Lrrtm4 | XP_017448300.1 | None |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.910 |