DRSC/TRiP Functional Genomics Resources

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Protein Alignment caps and Lingo4

DIOPT Version :10

Sequence 1:NP_001303391.1 Gene:caps / 39493 FlyBaseID:FBgn0023095 Length:811 Species:Drosophila melanogaster
Sequence 2:NP_001102659.1 Gene:Lingo4 / 499668 RGDID:1562025 Length:618 Species:Rattus norvegicus


Alignment Length:454 Identity:138/454 - (30%)
Similarity:198/454 - (43%) Gaps:49/454 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 RRRAITMSLAPHLGQAFSLCLCLCLCLVLATLPVALGLANCPNGCECDDDTLMVNCGEGTLDVLP 67
            |.:.:..:.||.  ||:.|...|   |.|..||.. .:::||..|:|...|..|.|....||.:|
  Rat    22 RPQGMDAATAPK--QAWLLWSPL---LFLLLLPGG-SISSCPTLCDCTSQTRAVLCAHRRLDTVP 80

  Fly    68 IALNPAIQRLVIKNNKLKTIDSSM-QFYAQLTFLDLSFNDMLTIPERSFAYHAKLQELHLDHNKI 131
            ..|....:.|.:..|:|..:...| ....||..||||:|.:.|:...:|.....|..|.|..|::
  Rat    81 GGLPLDTEVLDLSGNRLWGLQRGMLSRLGQLQELDLSYNQLSTLEPGAFHGLQSLLTLRLQGNRL 145

  Fly   132 GQVSNKTFLGLSTISVLNLRGNLIAELEYRTFSPMVKLAELNLGQNRISHIDPHALDGLDNLRVL 196
            ..|....|.|||.:::|:||.|.|.......|..:..|.:|.:|.|.:..:.|.|..||..|..:
  Rat   146 RIVGPGIFSGLSALTLLDLRLNQIVLFLDGAFGELGSLQQLEVGDNHLVFVAPGAFSGLAKLSTI 210

  Fly   197 YLDDNTLTTVPGELTFQALHSLAELYLGTNSFMTIPGGAFQDLKGLTRLDL-RGAGLHNISGDAL 260
            .|:...|:|||| |....|.:|..|.|.......:|.||.:.|..|..|:: ....|..:...:|
  Rat   211 TLERCNLSTVPG-LALAQLPALVALRLRELDIERLPSGALRGLGQLKELEIHHWPSLEALDPGSL 274

  Fly   261 KGLVSLRFLDLSDNRLPAIPTAAFQRLGRLEQLNIGQNDFEVISSGAFSGLRELRHLELTGAQRL 325
            .|| :|..|.::...|.::|..|...|..|:.|::.||....|.:...|.|..|:.|.|:|| .|
  Rat   275 VGL-NLSSLAITHCNLSSVPFQALHHLSFLQVLDLSQNPISAIPARRLSPLVRLQELRLSGA-CL 337

  Fly   326 RRVESGAFSGNTNLEHLNLSSNKQLNELSSIALGGLPHLSTVVLKANQLSSLDEGLVPWAD-LQT 389
            ..:.:.||.|.|....|:::.                         |.|.:|:|...|..| |.|
  Rat   338 TSIAAHAFHGLTAFHLLDVAD-------------------------NALQTLEETAFPSPDKLVT 377

  Fly   390 LDLSENPFECDCRLLWLRHLLVSRNASGQYAPVICAYP-----TALRD----LPLAHL-AEPLL 443
            |.||.||..||||||||  |.:.|......:|..||.|     ..||:    ||..|. .:|.|
  Rat   378 LRLSGNPLTCDCRLLWL--LRLRRRLDFGTSPPACAGPQHVQGKNLREFSDILPPGHFTCKPAL 439

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
capsNP_001303391.1 leucine-rich repeat 75..96 CDD:275380 4/21 (19%)
LRR_8 96..155 CDD:404697 22/58 (38%)
leucine-rich repeat 97..120 CDD:275380 8/22 (36%)
leucine-rich repeat 121..144 CDD:275380 8/22 (36%)
LRR 135..>398 CDD:443914 77/264 (29%)
leucine-rich repeat 145..168 CDD:275380 6/22 (27%)
leucine-rich repeat 169..192 CDD:275380 8/22 (36%)
leucine-rich repeat 193..217 CDD:275380 9/23 (39%)
leucine-rich repeat 218..241 CDD:275380 7/22 (32%)
leucine-rich repeat 242..265 CDD:275380 6/23 (26%)
leucine-rich repeat 266..289 CDD:275380 6/22 (27%)
leucine-rich repeat 290..313 CDD:275380 7/22 (32%)
leucine-rich repeat 314..335 CDD:275380 8/20 (40%)
leucine-rich repeat 339..363 CDD:275380 1/23 (4%)
LRRCT 395..445 CDD:214507 23/59 (39%)
Lingo4NP_001102659.1 leucine-rich repeat 87..110 CDD:275380 4/22 (18%)
LRR <88..441 CDD:443914 116/382 (30%)
leucine-rich repeat 111..134 CDD:275380 8/22 (36%)
leucine-rich repeat 135..158 CDD:275380 8/22 (36%)
leucine-rich repeat 159..182 CDD:275380 6/22 (27%)
leucine-rich repeat 183..206 CDD:275380 8/22 (36%)
leucine-rich repeat 207..230 CDD:275380 9/23 (39%)
leucine-rich repeat 231..254 CDD:275380 7/22 (32%)
leucine-rich repeat 255..302 CDD:275380 12/47 (26%)
leucine-rich repeat 303..326 CDD:275380 7/22 (32%)
leucine-rich repeat 327..348 CDD:275380 8/21 (38%)
leucine-rich repeat 351..374 CDD:275380 6/47 (13%)
IG_like 445..526 CDD:214653
Ig strand B 456..460 CDD:409353
Ig strand C 469..473 CDD:409353
Ig strand E 492..496 CDD:409353
Ig strand F 506..511 CDD:409353
Ig strand G 519..522 CDD:409353
Blue background indicates that the domain is not in the aligned region.

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