DRSC/TRiP Functional Genomics Resources

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Protein Alignment caps and LRRC24

DIOPT Version :10

Sequence 1:NP_001303391.1 Gene:caps / 39493 FlyBaseID:FBgn0023095 Length:811 Species:Drosophila melanogaster
Sequence 2:NP_001019849.2 Gene:LRRC24 / 441381 HGNCID:28947 Length:513 Species:Homo sapiens


Alignment Length:586 Identity:136/586 - (23%)
Similarity:188/586 - (32%) Gaps:220/586 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 LCLVLATLPVALGLANCPNGCECDDDTLMVNCGEGTLDVLPIALNPAIQRLVIKNNKLKTIDSSM 91
            |.|:|..||  |..|.||..|.|...|  |.||...|.|:|:.:.|..|.|.:::          
Human     9 LPLLLLLLP--LRAAGCPAACRCYSAT--VECGALRLRVVPLGIPPGTQTLFLQD---------- 59

  Fly    92 QFYAQLTFLDLSFNDMLTIPERSFAYHAKLQELHLDHNKIGQVSNKTFLGLSTISVLNLRGNLIA 156
                                                                             
Human    60 ----------------------------------------------------------------- 59

  Fly   157 ELEYRTFSPMVKLAELNLGQNRISHIDPHALDGLDNLRVLYLDDNTLTTVPGELTFQALHSLAEL 221
                                |.|:.::|.||..|..||.|||.:|:|..:... .|:|...|.||
Human    60 --------------------NNIARLEPGALAPLAALRRLYLHNNSLRALEAG-AFRAQPRLLEL 103

  Fly   222 YLGTNSFMTIPGGAFQDLKGLTRLDLRGAGLHNISGDALKGLVSLRFLDLSDNRLPAIPTAAFQR 286
            .|.:|....:..|||                        .||..||.|.|:.|:|..:....|..
Human   104 ALTSNRLRGLRSGAF------------------------VGLAQLRVLYLAGNQLARLLDFTFLH 144

  Fly   287 LGRLEQLNIGQNDFEVISSGAFSGLRELRHLELTGAQRLRRVESGAFSGNTNLEHLNLSSNKQLN 351
            |.||::|::.:|..|::...|.:|                                         
Human   145 LPRLQELHLQENSIELLEDQALAG----------------------------------------- 168

  Fly   352 ELSSIALGGLPHLSTVVLKANQLSSLD-EGLVPWADLQTLDLSENPFECDCRLLWL--------R 407
             |||:||        :.|..|||.::. |.|.|.|.||.|.|:|||:.|||.|.||        :
Human   169 -LSSLAL--------LDLSRNQLGTISREALQPLASLQVLRLTENPWRCDCALHWLGAWIKEGGQ 224

  Fly   408 HLLVSRNASGQYAPVICAYPTALRDLPLAHLAEPLLGCAHGAASKQ-----AIIG-ILVVACAAL 466
            .||.||:..     ::||.|..|....|..::...|.|...:...|     |.:| .|.|||.|.
Human   225 RLLTSRDRK-----IMCAEPPRLALQSLLDVSHSSLICIPPSVHVQPLELTANLGEDLRVACQAS 284

  Fly   467 ITTLALVLY-------TCRHRIREMLKGHSALGRKEREYQKTFSDEEYMSRPPPGGGGVHPA--- 521
            .....||.:       ..|.|.:..|:| ..||........|.|...::|.......|.:..   
Human   285 GYPQPLVTWRKVPQPREGRPRAQAQLEG-GLLGLGGHSASDTGSGMLFLSNITLAHAGKYECEAS 348

  Fly   522 -AGG-----YPYIAGNSRMIPVTELXLEAPPPPQLRGRG------GGGGASTASGAVQQLQVPSA 574
             |||     :..:...||..|...   ..||||..|..|      .|..|..|.|...|..:.:|
Human   349 NAGGAARVPFRLLVNASRQQPQQP---AQPPPPAARPAGSEPRPEAGSMAFRALGVATQTAIAAA 410

  Fly   575 V 575
            :
Human   411 I 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
capsNP_001303391.1 leucine-rich repeat 75..96 CDD:275380 2/20 (10%)
LRR_8 96..155 CDD:404697 0/58 (0%)
leucine-rich repeat 97..120 CDD:275380 0/22 (0%)
leucine-rich repeat 121..144 CDD:275380 0/22 (0%)
LRR 135..>398 CDD:443914 60/263 (23%)
leucine-rich repeat 145..168 CDD:275380 0/22 (0%)
leucine-rich repeat 169..192 CDD:275380 6/22 (27%)
leucine-rich repeat 193..217 CDD:275380 9/23 (39%)
leucine-rich repeat 218..241 CDD:275380 8/22 (36%)
leucine-rich repeat 242..265 CDD:275380 2/22 (9%)
leucine-rich repeat 266..289 CDD:275380 8/22 (36%)
leucine-rich repeat 290..313 CDD:275380 6/22 (27%)
leucine-rich repeat 314..335 CDD:275380 0/20 (0%)
leucine-rich repeat 339..363 CDD:275380 5/23 (22%)
LRRCT 395..445 CDD:214507 18/57 (32%)
LRRC24NP_001019849.2 LRR 1 51..72 7/115 (6%)
LRR <53..>204 CDD:443914 59/320 (18%)
leucine-rich repeat 53..75 CDD:275380 8/116 (7%)
LRR 2 75..96 8/21 (38%)
LRR_8 76..134 CDD:404697 24/82 (29%)
leucine-rich repeat 76..99 CDD:275380 9/23 (39%)
LRR 3 99..120 8/44 (18%)
leucine-rich repeat 100..123 CDD:275380 10/46 (22%)
LRR 4 123..144 7/20 (35%)
leucine-rich repeat 124..147 CDD:275380 8/22 (36%)
LRR 5 147..168 6/20 (30%)
leucine-rich repeat 148..171 CDD:275380 7/64 (11%)
LRR 6 171..192 9/28 (32%)
leucine-rich repeat 172..195 CDD:275380 9/30 (30%)
PCC 180..>257 CDD:188093 30/81 (37%)
Ig_3 259..349 CDD:464046 20/90 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 365..391 9/28 (32%)

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