DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment caps and CG7896

DIOPT Version :9

Sequence 1:NP_001303391.1 Gene:caps / 39493 FlyBaseID:FBgn0023095 Length:811 Species:Drosophila melanogaster
Sequence 2:NP_651754.1 Gene:CG7896 / 43552 FlyBaseID:FBgn0039728 Length:1392 Species:Drosophila melanogaster


Alignment Length:813 Identity:182/813 - (22%)
Similarity:266/813 - (32%) Gaps:326/813 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 LNPAIQRLVIKNNKLK----TIDSSMQFYAQLTFLDLSFNDMLTIPERSF--------------- 115
            ::|.::.:...|||..    .:.|::|:   |..:|||.|.:.||.|..|               
  Fly   664 IHPRLREIRAANNKFSFFPAELISTLQY---LEHIDLSHNQLKTIEELDFARLPRLRVLLVANNQ 725

  Fly   116 -------AYH--AKLQELHLDHNKIGQVSNKTFLGLSTISVLNLRGNLIAELEYRTF--SPMVKL 169
                   |:|  .:||.|.|.||.:.::..:||.||..:..|||.||.::||....|  :.:..|
  Fly   726 LDMVSEMAFHNSTQLQILDLAHNNLDRIGERTFEGLVRLEQLNLEGNRLSELSDGVFERTKLQML 790

  Fly   170 AELNLGQNRISHIDPHALDGLDNLRVLY------LDDNTLTTVPG-----------ELTFQALHS 217
            ..:||..||..:...:||.     |..:      |..|.:..:||           :|:|..|.|
  Fly   791 ENINLAHNRFEYAPLNALQ-----RQFFFVSSVDLSHNKIKELPGDDSIMVNIKRIDLSFNPLSS 850

  Fly   218 LAELYLGTNSFMTIPGGAFQDLKGLTRLDLRGAGLHNISGDALKGLVSLRFLDLSDNRLPAIPTA 282
            .|     .::.:..|       |.:..|.|.|.|:.|:.   |.....|:||:||.|:|..:...
  Fly   851 KA-----VHNVLNEP-------KTVRELSLAGTGIENLE---LLETPFLQFLNLSHNKLKNVKPE 900

  Fly   283 AFQRLGRLE--------------------------QLNIGQNDFEVISSGAFSGLRELRHLELTG 321
            .|||:..||                          .|::..|.||::|...|..|..||.|.|:.
  Fly   901 VFQRVTLLETLDLSSNQLESLEDLSMAWPQLQVLQSLDVSNNSFEIVSQSNFGKLEMLRSLRLSH 965

  Fly   322 AQRLRRVESGAFSGNTN----------------------------------------------LE 340
            ..:..|:|..||....|                                              |:
  Fly   966 LPQCTRIEKNAFKQLPNLVSLEAYDLPLLGYLDLQGILELLPGLEVLDIEVKDSSIGSEQIQPLK 1030

  Fly   341 HLNLSS----NKQLNELSSIALGGL------------------PHLSTVVLKANQLSSLDEG--- 380
            |..|.|    ..:|..:||..|.||                  |.|...|.:::.||...||   
  Fly  1031 HPRLKSLGIRGDRLKSISSGTLAGLKSNDLSVQLRNTSLNALPPALLFPVPRSSHLSLNVEGSKI 1095

  Fly   381 --LVPW---------ADLQTLDLSENPFECDCRLLWLR--------------------------- 407
              |||.         |.||...|:.||..|||....||                           
  Fly  1096 TVLVPQFLNALEDRRASLQLQGLASNPIVCDCNARALRRWLPSSGMPDVTCASPAYLLNRKLIEV 1160

  Fly   408 ------------------------HL------LVSRNASGQYAPVIC-----AYPTALRDL---- 433
                                    ||      ||:|::|....|:|.     ..|.:|:.:    
  Fly  1161 GDDELTCDARRMTSSTSRPTASVPHLLKTSSQLVTRSSSTTEEPLIIWSLEPTQPPSLKKMKTKA 1225

  Fly   434 PLAHLAEPLLGCAHGAASKQAIIGIL--VVACAALITTLALVLYTCRHRIREMLKGHSALGRKER 496
            ||.....|::     :.....||||:  |||..|:     |::..|..|:|          ....
  Fly  1226 PLMKAQSPII-----SNDDTLIIGIVGGVVAFIAI-----LIIIICIIRLR----------MSNA 1270

  Fly   497 EYQKTFSDEEYMSRPPPG-GGGVHPAAGGYPYIAGNSRMIPVTELXLEAPPPPQLRGRGGGGGAS 560
            |||:..:    |...|.| ..|.|.||..|...||         . |.|.||             
  Fly  1271 EYQQNAT----MIGIPAGMQMGAHNAAYNYKNGAG---------AALYAVPP------------- 1309

  Fly   561 TASGAVQQLQVP---SAVDQASNSFAQLSHIHYMTNNGQQQQAQQQQSTSKMHHSQQDMRLLA-- 620
                  ....:|   :::.|:|.:.:|           :|||.||||..:....:...|..::  
  Fly  1310 ------YHATLPHKAASIHQSSQNLSQ-----------RQQQQQQQQQVAAAAAAYSTMSRMSYF 1357

  Fly   621 --CNGGKPLNATSLPRHRPPVVQESTLSHYSQP 651
              ..||....|.||....|         |..||
  Fly  1358 SGAGGGNGDGAESLTHQHP---------HQHQP 1381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
capsNP_001303391.1 leucine-rich repeat 75..96 CDD:275380 5/24 (21%)
LRR_8 96..155 CDD:290566 26/82 (32%)
leucine-rich repeat 97..120 CDD:275380 11/46 (24%)
leucine-rich repeat 121..144 CDD:275380 10/22 (45%)
LRR_8 143..201 CDD:290566 17/65 (26%)
leucine-rich repeat 145..168 CDD:275380 8/24 (33%)
LRR_RI 147..397 CDD:238064 86/376 (23%)
leucine-rich repeat 169..192 CDD:275380 7/22 (32%)
leucine-rich repeat 193..217 CDD:275380 8/40 (20%)
LRR_8 217..276 CDD:290566 16/58 (28%)
leucine-rich repeat 218..241 CDD:275380 2/22 (9%)
leucine-rich repeat 242..265 CDD:275380 6/22 (27%)
LRR_8 265..321 CDD:290566 23/81 (28%)
leucine-rich repeat 266..289 CDD:275380 10/22 (45%)
leucine-rich repeat 290..313 CDD:275380 9/48 (19%)
LRR_8 312..374 CDD:290566 22/129 (17%)
leucine-rich repeat 314..335 CDD:275380 8/20 (40%)
leucine-rich repeat 339..363 CDD:275380 10/45 (22%)
LRRCT 395..445 CDD:214507 20/115 (17%)
CG7896NP_651754.1 LRR_8 109..172 CDD:290566
leucine-rich repeat 109..132 CDD:275380
LRR_RI <132..338 CDD:238064
leucine-rich repeat 133..161 CDD:275380
LRR_8 160..220 CDD:290566
leucine-rich repeat 162..185 CDD:275380
leucine-rich repeat 186..209 CDD:275380
leucine-rich repeat 210..233 CDD:275380
LRR_8 232..290 CDD:290566
leucine-rich repeat 234..257 CDD:275380
leucine-rich repeat 258..281 CDD:275380
LRR_RI 273..535 CDD:238064
LRR_8 281..338 CDD:290566
leucine-rich repeat 282..329 CDD:275380
LRR_8 328..388 CDD:290566
leucine-rich repeat 330..353 CDD:275380
leucine-rich repeat 354..377 CDD:275380
leucine-rich repeat 378..401 CDD:275380
leucine-rich repeat 402..425 CDD:275380
leucine-rich repeat 428..451 CDD:275380
LRR_8 429..487 CDD:290566
leucine-rich repeat 452..473 CDD:275380
leucine-rich repeat 477..497 CDD:275378
LRR_8 498..558 CDD:290566
leucine-rich repeat 500..523 CDD:275380
LRR_RI 502..769 CDD:238064 28/107 (26%)
leucine-rich repeat 524..547 CDD:275380
leucine-rich repeat 548..571 CDD:275380
LRR_8 572..630 CDD:290566
leucine-rich repeat 572..595 CDD:275380
leucine-rich repeat 596..619 CDD:275380
LRR_8 619..678 CDD:290566 3/13 (23%)
leucine-rich repeat 620..643 CDD:275380
leucine-rich repeat 644..667 CDD:275380 0/2 (0%)
LRR_8 666..726 CDD:290566 15/62 (24%)
leucine-rich repeat 668..691 CDD:275380 4/22 (18%)
leucine-rich repeat 692..715 CDD:275380 9/22 (41%)
LRR_8 714..774 CDD:290566 17/59 (29%)
leucine-rich repeat 716..739 CDD:275380 2/22 (9%)
leucine-rich repeat 740..761 CDD:275380 8/20 (40%)
leucine-rich repeat 764..789 CDD:275380 8/24 (33%)
leucine-rich repeat 790..810 CDD:275380 7/24 (29%)
leucine-rich repeat 818..850 CDD:275380 7/31 (23%)
leucine-rich repeat 863..883 CDD:275378 6/22 (27%)
LRR_RI <878..1070 CDD:238064 39/191 (20%)
LRR_8 884..944 CDD:290566 14/59 (24%)
LRR_4 884..925 CDD:289563 12/40 (30%)
leucine-rich repeat 884..907 CDD:275380 10/22 (45%)
leucine-rich repeat 908..933 CDD:275380 2/24 (8%)
leucine-rich repeat 934..955 CDD:275380 6/20 (30%)
leucine-rich repeat 958..982 CDD:275380 8/23 (35%)
leucine-rich repeat 983..1055 CDD:275380 8/71 (11%)
leucine-rich repeat 1009..1033 CDD:275380 2/23 (9%)
leucine-rich repeat 1058..1085 CDD:275380 3/26 (12%)
TPKR_C2 1121..1168 CDD:301599 7/46 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45453540
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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