Protein Alignment caps and alrm

DIOPT Version :10

• Sequence 1: NP_001303391.1
• Gene: caps / 39493
• FlyBaseID: FBgn0023095
• Length: 811
• Species: Drosophila melanogaster
• Sequence 2: NP_651393.1
• Gene: alrm / 43074
• FlyBaseID: FBgn0039332
• Length: 471
• Species: Drosophila melanogaster
• Alignment Length: 421
• Identity: 111/421 - (26%)
• Similarity: 168/421 - (39%)
• Gaps: 78/421 - (18%)

  Fly     7 ITMSLAP--HL-------GQAFSLCL---C---LCLCLVLATLPVALGLANCPNGCECDDDTLMV 56
            :.:.|.|  ||       ||...|.|   |   :|..:|:......: |:..|.|     .|.|:
  Fly    12 VVLILPPSYHLATPSSGSGQLRRLWLQDHCSAGICTNVVIGRSDYVI-LSQAPIG-----GTTML 70

  Fly    57 NCGEGTLDVLPIAL---NPAIQRLVIKNNKLKTIDSSMQF--YAQLTFLDLSFNDMLTIPERSFA 116
            .....::..:|..|   .|.:|.|.::|..|:|.:.. ||  .:.|..|.|.:|.:..||:..|.
  Fly    71 TFLNSSIAKIPHLLFDTFPDLQVLRMENCSLETFEKP-QFEGASNLMSLFLGYNRLKDIPKNIFL 134

  Fly   117 YHAKLQELHLDHNKIGQVSNKTFLGLSTISVLNLRGNLIAELEYRTFSPMVKLAELNLGQNRISH 181
            ....|..|||..|::.|:.|.:|..|..:..|:|..|.:.::....||.|.||.:|||..||:..
  Fly   135 GADNLATLHLQGNQLKQLGNHSFHALKEVKELSLAENQLEQISLGVFSGMRKLMDLNLAGNRLDA 199

  Fly   182 IDPHALDGLDNLRVLYLDDNTLTTVPGELTFQALHSLAELYLGTNSFMTIPGGAFQDLK-GLTRL 245
            :.....|...||..|.|..|..|....||.     .|..::    :.:.|.|..||:|. ..|.|
  Fly   200 LPRGVFDRNLNLTKLNLARNRFTAFESELL-----KLQPVF----TQLDISGNIFQELTLNFTML 255

  Fly   246 DLRGAGLHNISGDALKGLVSLRFLDLSDNRL---PAIPTAAFQRLGRLEQLNIGQNDFEVISSG- 306
            |:..|...::....:.|::  ..|||.:|.|   |.||.||     .:..|::..|....:...
  Fly   256 DVAIAHSCDLRRLTVYGVI--HELDLHNNSLREMPHIPLAA-----NVSSLDLSHNPLGNLQGNP 313

  Fly   307 --AFSGLRELRHLELTGAQRLRRVESGAFSGNTNLEHLNLSSNKQLNELSSIALGGLPHLSTVVL 369
              .|:.|..| :|..|||..|   ..|.|...::|:.|::|.|                 |...|
  Fly   314 LRRFTSLLRL-NLSATGAHEL---PEGLFKKQSHLQMLDISGN-----------------SIYSL 357

  Fly   370 KANQLSSLDEGLVPWADLQTLDLSENPFECD 400
            |.....||..       ||.....:|.:.||
  Fly   358 KITIFDSLKA-------LQYFYFQQNNWNCD 381

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
caps	NP_001303391.1	leucine-rich repeat	75..96	CDD:275380	7/22 (32%)
		LRR_8	96..155	CDD:404697	19/58 (33%)
		leucine-rich repeat	97..120	CDD:275380	7/22 (32%)
		leucine-rich repeat	121..144	CDD:275380	9/22 (41%)
		LRR	135..>398	CDD:443914	70/269 (26%)
		leucine-rich repeat	145..168	CDD:275380	6/22 (27%)
		leucine-rich repeat	169..192	CDD:275380	7/22 (32%)
		leucine-rich repeat	193..217	CDD:275380	7/23 (30%)
		leucine-rich repeat	218..241	CDD:275380	6/23 (26%)
		leucine-rich repeat	242..265	CDD:275380	5/22 (23%)
		leucine-rich repeat	266..289	CDD:275380	10/25 (40%)
		leucine-rich repeat	290..313	CDD:275380	4/25 (16%)
		leucine-rich repeat	314..335	CDD:275380	8/20 (40%)
		leucine-rich repeat	339..363	CDD:275380	4/23 (17%)
		LRRCT	395..445	CDD:214507	3/6 (50%)
alrm	NP_651393.1	leucine-rich repeat	91..114	CDD:275380	7/23 (30%)
		LRR	<100..426	CDD:443914	89/327 (27%)
		leucine-rich repeat	115..138	CDD:275380	7/22 (32%)
		leucine-rich repeat	139..162	CDD:275380	9/22 (41%)
		leucine-rich repeat	163..186	CDD:275380	6/22 (27%)
		leucine-rich repeat	187..210	CDD:275380	7/22 (32%)
		leucine-rich repeat	211..283	CDD:275380	21/82 (26%)
		leucine-rich repeat	284..319	CDD:275380	9/39 (23%)
		leucine-rich repeat	320..343	CDD:275380	9/26 (35%)
		leucine-rich repeat	344..365	CDD:275380	7/37 (19%)