DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment caps and atk

DIOPT Version :10

Sequence 1:NP_001303391.1 Gene:caps / 39493 FlyBaseID:FBgn0023095 Length:811 Species:Drosophila melanogaster
Sequence 2:NP_649228.1 Gene:atk / 40266 FlyBaseID:FBgn0036995 Length:1535 Species:Drosophila melanogaster


Alignment Length:846 Identity:179/846 - (21%)
Similarity:296/846 - (34%) Gaps:221/846 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 LPIALN-----PAIQRLVIKNNKLKTID-SSMQFYAQLTFLDLSFNDMLTIPERSFAYHAKLQEL 124
            ||.|.:     |.::.|.:..|:::.:. ...|...:|..|.|:.|::..:.:.||....:|:.|
  Fly   538 LPAAASKDLQLPNLRMLDLSQNRIEQLPRHGFQGAMELRVLSLAQNELRQLKDTSFIGIQRLELL 602

  Fly   125 HLDHNKIGQVSNKTFLGLSTISVLNLRGNLIAELEYRTFSPMVKLAELNLGQNRISHIDPHALD- 188
            ||..|::|:...:..|.|:.:..|||:.|.:..:....||...:|.:|:|.:|.|..|.|.|.| 
  Fly   603 HLQENQLGEADERALLPLAELRNLNLQSNKLEAITDNFFSNNSRLEQLDLSRNLIRSISPTAFDT 667

  Fly   189 ----------------------GLDNLRVLYLDDNTLTTVPGELTFQALHSLAELYLGTNSFMTI 231
                                  .|:|||.:.|..|.::.:..:: .....::.|:.|..|..:.:
  Fly   668 QRSLEYLDLSGNALLDISVGLGNLNNLRDIDLSYNQISRIQSDV-IGGWRNVVEIRLSNNLIVEL 731

  Fly   232 PGGAFQDLKGLTRLDLRGAGLHNISGDALKGLVSLRFLDLSDNRLPAIPTAAFQRLGRLEQLNIG 296
            ..|.|::|..|..|||....:.|:...|||||..|:...|:||:|..:....|:.|..|...:..
  Fly   732 QQGTFRNLPKLQYLDLSSNEIRNVEPGALKGLDELQEFVLADNKLVELKDHVFEELPSLLASHFQ 796

  Fly   297 QNDFEVISSGAFSGLRELRHLELTGAQRLRRVESGAFSGNTNLEHLNLSSN----------KQLN 351
            .|....||..:|.....|..|.|:. ...|.:|:.......|||.|:||:|          |.||
  Fly   797 YNKLRYISPESFHNANSLVFLNLSN-NHFRNMENIGLRSMRNLEVLDLSTNGVKLVSTMPLKALN 860

  Fly   352 ELSSIALGG-------------LPHLSTVVLKANQLSSLDE-------GLVPWADLQTLDLSENP 396
            .|..:.:..             :|.|..:.::.|||.|:.|       |     ::..||:..||
  Fly   861 WLVELKMDNNQICRIQGSPFETMPRLRVLSMRNNQLRSIKERTFRNVRG-----NIAILDVDGNP 920

  Fly   397 FECDCRLLWL----------------------------RHLLV------SRNASGQYAPVICAYP 427
            .:|:|.:.||                            |.|.|      :....|...|::..:.
  Fly   921 IDCNCEMQWLSVWLQETNFPYPGPKCQDGRLLRSARMERSLCVGADIYGNERTDGNQLPLLNEHG 985

  Fly   428 TAL-RDLPLAHLAEPLLGCAHGAASK----QAIIG-------ILVVACAALITTLALVLYTCRHR 480
            ... ||||.....|    |..|..::    :.::|       ..|.|..|..||           
  Fly   986 DVFQRDLPDDFNDE----CEAGEGTRLPGDRPLVGESEYFYDQYVDATEAPDTT----------- 1035

  Fly   481 IREMLKGHSALGRKER-----------EYQKTFSDEEYMSRPPPGGGGVHPAAGGYPYIAGNSRM 534
                   |||:...:|           :...|....:|.:|.|..|.|......|||        
  Fly  1036 -------HSAISTSQRPKPTPTINSNIDLNNTILHTKYFNRKPQPGSGSPFTFFGYP-------- 1085

  Fly   535 IPVTELXLEAPPPPQLRGRGGGGGASTASGAVQQLQVPSAVDQASNSFAQLSHIHYMTNNGQQQQ 599
            :|...|           ||..|.|   ..|..|  :..|..|..:..  :::||...:..|:.:.
  Fly  1086 LPSVSL-----------GRFFGFG---DRGRKQ--RTDSNDDMPATH--RMAHISLPSGRGKTRM 1132

  Fly   600 AQQQQSTSKMH---HSQQDMRLLACNGGKPLNATSLPRHRPPVVQESTLSHYSQPLANGIRLTQD 661
            .|...:..:.:   ..:|:...:|.|.....::|:..       .|..||:.|...|..:.:.:.
  Fly  1133 YQPNSAEFEKYLKDQQKQEKLNIARNRYVDTDSTTSS-------MEDALSNESGSAATTVGVFRT 1190

  Fly   662 HFNHNQNQSHN-------QHYGGVYAKPCDAMSEPGYIH------NNSHY--------SLPLDHD 705
            .|....:....       .|.|| :....|.....|.:.      |.|..        .:|:...
  Fly  1191 TFREPSSIERGGFRPIVPAHVGG-FMPVHDPQQRRGLVEVVNITGNPSEIVQGIGQRKFIPISTQ 1254

  Fly   706 LPPSPTP-------------TPPPPAL----PLRNGVGMALIHGNTTGRRSFNNNNNVS-TLSNN 752
            ..|.||.             |...|.:    ||...:..:....:||..||....:... |.:.|
  Fly  1255 ARPKPTKSSGESSETATYEVTETTPDITTTTPLMQRIATSTTKASTTTTRSTTTTSTTQVTPAEN 1319

  Fly   753 N 753
            |
  Fly  1320 N 1320

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
capsNP_001303391.1 leucine-rich repeat 75..96 CDD:275380 3/21 (14%)
LRR_8 96..155 CDD:404697 18/58 (31%)
leucine-rich repeat 97..120 CDD:275380 6/22 (27%)
leucine-rich repeat 121..144 CDD:275380 8/22 (36%)
LRR 135..>398 CDD:443914 79/315 (25%)
leucine-rich repeat 145..168 CDD:275380 6/22 (27%)
leucine-rich repeat 169..192 CDD:275380 10/45 (22%)
leucine-rich repeat 193..217 CDD:275380 4/23 (17%)
leucine-rich repeat 218..241 CDD:275380 6/22 (27%)
leucine-rich repeat 242..265 CDD:275380 10/22 (45%)
leucine-rich repeat 266..289 CDD:275380 7/22 (32%)
leucine-rich repeat 290..313 CDD:275380 5/22 (23%)
leucine-rich repeat 314..335 CDD:275380 5/20 (25%)
leucine-rich repeat 339..363 CDD:275380 10/46 (22%)
LRRCT 395..445 CDD:214507 16/84 (19%)
atkNP_649228.1 leucine-rich repeat 886..906 CDD:275380 6/19 (32%)
PCC 891..>936 CDD:188093 14/49 (29%)
leucine-rich repeat 69..89 CDD:275380
leucine-rich repeat 90..113 CDD:275380
LRR 93..530 CDD:443914
leucine-rich repeat 115..138 CDD:275380
leucine-rich repeat 139..160 CDD:275380
leucine-rich repeat 161..184 CDD:275380
leucine-rich repeat 185..209 CDD:275380
leucine-rich repeat 210..233 CDD:275380
leucine-rich repeat 234..259 CDD:275380
leucine-rich repeat 260..283 CDD:275380
leucine-rich repeat 284..307 CDD:275380
leucine-rich repeat 308..359 CDD:275380
leucine-rich repeat 334..348 CDD:275378
PLN00113 359..>824 CDD:215061 73/287 (25%)
leucine-rich repeat 360..383 CDD:275380
leucine-rich repeat 384..407 CDD:275380
leucine-rich repeat 408..431 CDD:275380
leucine-rich repeat 432..455 CDD:275380
leucine-rich repeat 456..476 CDD:275380
leucine-rich repeat 480..501 CDD:275380
leucine-rich repeat 505..517 CDD:275378
leucine-rich repeat 525..550 CDD:275380 3/11 (27%)
leucine-rich repeat 551..574 CDD:275380 3/22 (14%)
leucine-rich repeat 575..598 CDD:275380 6/22 (27%)
leucine-rich repeat 599..622 CDD:275380 8/22 (36%)
leucine-rich repeat 623..646 CDD:275380 6/22 (27%)
leucine-rich repeat 647..670 CDD:275380 9/22 (41%)
leucine-rich repeat 671..693 CDD:275380 1/21 (5%)
leucine-rich repeat 694..717 CDD:275380 4/23 (17%)
leucine-rich repeat 718..741 CDD:275380 6/22 (27%)
leucine-rich repeat 742..763 CDD:275380 8/20 (40%)
leucine-rich repeat 766..789 CDD:275380 7/22 (32%)
leucine-rich repeat 790..813 CDD:275380 5/22 (23%)
leucine-rich repeat 814..835 CDD:275380 5/21 (24%)
leucine-rich repeat 838..861 CDD:275380 8/22 (36%)
leucine-rich repeat 862..885 CDD:275380 1/22 (5%)
Blue background indicates that the domain is not in the aligned region.

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