DRSC/TRiP Functional Genomics Resources

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Protein Alignment caps and CG5096

DIOPT Version :10

Sequence 1:NP_001303391.1 Gene:caps / 39493 FlyBaseID:FBgn0023095 Length:811 Species:Drosophila melanogaster
Sequence 2:NP_723576.1 Gene:CG5096 / 34410 FlyBaseID:FBgn0032235 Length:491 Species:Drosophila melanogaster


Alignment Length:485 Identity:129/485 - (26%)
Similarity:203/485 - (41%) Gaps:93/485 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 KLKTIDSSM----QFYAQLTFLDLS--FNDMLTIPERSFAYHAKL--QELHLDHNKIGQVSNKTF 139
            |:|.|||.:    ..|.....||.|  ..|.|:..:.....:..:  :.::|:||.:..|   ..
  Fly    38 KIKVIDSKLCKKCNCYIDTNLLDCSEKLQDWLSAEDWEDLTNGNVVFKTINLEHNNLTSV---PI 99

  Fly   140 LGLSTISVLNLRGNLIAELEYRTFSPMVKLAELNLGQNRISH--IDPHALDG---------LDNL 193
            |....:..|.|..|.|..:....|..:.:|..|:|..||::.  :.|....|         |:||
  Fly   100 LPKYDVENLYLANNQIDSISVGAFQNLTELVTLDLSHNRLTSKVLVPDVFKGPFTVQDFESLENL 164

  Fly   194 RVLYLDDNTLTTVPGELTFQALHSLAELYLGTNSFMTIPGGAFQDLKGLTRLDLRGAGLHNISGD 258
            :.|.|..|.|.::..:| |:.:..:.||.|.:|||..|                     ..:|..
  Fly   165 KTLNLGYNDLHSLDADL-FEHIPHIEELVLCSNSFHVI---------------------DQLSET 207

  Fly   259 ALKGLVSLRFLDLSDNRLPAIPTA----------------AFQRLGR-------LEQLNIGQNDF 300
            |:.||.||:.||:|...:..:|..                .|.:|.:       |..|.:.:|..
  Fly   208 AISGLQSLKILDVSYMEIDDLPDTILHGPRDLEIFIAAGNLFNQLPKALKYATNLTSLVLNENPI 272

  Fly   301 E-VISSGAFSGLRELRHLELTGAQRLRRVESGAFSGNTNLEHLNLSSNKQLNELSSIAL-----G 359
            | :|....|..|.:|.||.:|...:|.::..||||...:|..|.||.||.|||:...||     |
  Fly   273 ENLIGDNVFPPLTKLTHLSMTFMSKLYKIGPGAFSELQSLTELILSDNKLLNEIDEEALSKNVTG 337

  Fly   360 G----LPHLSTVVLKANQLSSL-DEGLVPWADLQTLDLSENPFECDCRLLWLRHLLVSRNASGQY 419
            |    .|.|..|.|....:|:| .|.||.|..|:.|||..||:.||....:|.::|:.|  ..:.
  Fly   338 GQYLDYPPLEKVYLNNCNVSTLPKELLVRWDKLKALDLRFNPWNCDESNDFLINVLIDR--INKT 400

  Fly   420 APVI-----CAYPTALRDLPLAHLA-EPLLGCAHGAASKQAIIGILVVACAALITTLALVLYTCR 478
            .||:     |..|..|.|:.|..:| |.::..:.|:.   ..:|:|||...|:.|.:.  .|..:
  Fly   401 TPVLAKDVKCGGPNKLNDVTLLRVANEHMIESSTGSL---IWVGLLVVLLIAVPTIIG--AYVMK 460

  Fly   479 HR-IREMLKGHSALGRKEREYQKTFSDEEY 507
            .| ...:.:.|.: |.....|.:|..:|::
  Fly   461 RRGCFGVFRRHDS-GASSALYNRTSFNEDF 489

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
capsNP_001303391.1 leucine-rich repeat 75..96 CDD:275380 6/16 (38%)
LRR_8 96..155 CDD:404697 13/62 (21%)
leucine-rich repeat 97..120 CDD:275380 5/24 (21%)
leucine-rich repeat 121..144 CDD:275380 5/24 (21%)
LRR 135..>398 CDD:443914 86/307 (28%)
leucine-rich repeat 145..168 CDD:275380 5/22 (23%)
leucine-rich repeat 169..192 CDD:275380 8/33 (24%)
leucine-rich repeat 193..217 CDD:275380 7/23 (30%)
leucine-rich repeat 218..241 CDD:275380 7/22 (32%)
leucine-rich repeat 242..265 CDD:275380 4/22 (18%)
leucine-rich repeat 266..289 CDD:275380 7/38 (18%)
leucine-rich repeat 290..313 CDD:275380 7/23 (30%)
leucine-rich repeat 314..335 CDD:275380 8/20 (40%)
leucine-rich repeat 339..363 CDD:275380 13/32 (41%)
LRRCT 395..445 CDD:214507 16/55 (29%)
CG5096NP_723576.1 LRR 54..>322 CDD:443914 71/292 (24%)
leucine-rich repeat 85..104 CDD:275380 5/21 (24%)
leucine-rich repeat 105..128 CDD:275380 5/22 (23%)
leucine-rich repeat 129..163 CDD:275380 8/33 (24%)
leucine-rich repeat 164..187 CDD:275380 7/23 (30%)
leucine-rich repeat 188..214 CDD:275380 11/46 (24%)
leucine-rich repeat 215..238 CDD:275380 5/22 (23%)
leucine-rich repeat 239..261 CDD:275380 2/21 (10%)
leucine-rich repeat 262..286 CDD:275380 7/23 (30%)
leucine-rich repeat 287..311 CDD:275380 9/23 (39%)
leucine-rich repeat 346..369 CDD:275380 9/22 (41%)
leucine-rich repeat 370..388 CDD:275380 8/17 (47%)

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