Protein Alignment caps and Lrfn5

DIOPT Version :10

• Sequence 1: NP_001303391.1
• Gene: caps / 39493
• FlyBaseID: FBgn0023095
• Length: 811
• Species: Drosophila melanogaster
• Sequence 2: NP_001101494.1
• Gene: Lrfn5 / 314164
• RGDID: 1309357
• Length: 719
• Species: Rattus norvegicus
• Alignment Length: 306
• Identity: 85/306 - (27%)
• Similarity: 117/306 - (38%)
• Gaps: 75/306 - (24%)

  Fly   148 LNLRGNLIAELEYRTFSPMVKLAELNLGQNRISHIDPHALDGLDNLRVLYLDDNTLTTVPGELTF 212
            |.|..|.:..::.:.|:.|..|.:|.|.:|.||.|.|||...|.|||.|:|:.|.||.:..:: |
  Rat    56 LRLADNFVTNIKRKDFANMTSLVDLTLSRNTISFITPHAFADLRNLRALHLNSNRLTKITNDM-F 119

  Fly   213 QALHSLAELYLGTNSFMTIPGGAFQDLKGLTRLDLRGAGLHNISGDALKGLVSLRFLDLSDNRLP 277
            ..|.:|..|.|..|....|...||.|:..|..|||....|..|..||::.:|||..|.|..|.:.
  Rat   120 SGLSNLHHLILNNNQLTLISSTAFDDVFALEELDLSYNNLETIPWDAVEKMVSLHTLSLDHNMID 184

  Fly   278 AIPTAAFQRLGRLEQLNIGQNDFEVISSGAFSGLRELRHLELTGAQRLRRVESGAFSGNTNLEHL 342
            .||...|..|.::.:|::..|..:.:.....          ...||.|  ..||..|.:|
  Rat   185 NIPKGTFSHLHKMTRLDVTSNKLQKLPPDPL----------FQRAQVL--ATSGIISPST----- 232

  Fly   343 NLSSNKQLNELSSIALGGLPHLSTVVLKANQLSSLDEGLVPWADLQTLDLSENPFECDCRLLWLR 407
                       .:::.||                                  ||..|:|.|||||
  Rat   233 -----------FALSFGG----------------------------------NPLHCNCELLWLR 252

  Fly   408 HLLVSRNASGQYAPVICAYPTALR-----DLPLAH-LAEPLLGCAH 447
            .|  ||....:    .||.|..|.     .:|... |.||.|...|
  Rat   253 RL--SREDDLE----TCASPALLTGRYFWSIPEEEFLCEPPLITRH 292

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
caps	NP_001303391.1	leucine-rich repeat	75..96	CDD:275380
		LRR_8	96..155	CDD:404697	3/6 (50%)
		leucine-rich repeat	97..120	CDD:275380
		leucine-rich repeat	121..144	CDD:275380
		LRR	135..>398	CDD:443914	65/249 (26%)
		leucine-rich repeat	145..168	CDD:275380	5/19 (26%)
		leucine-rich repeat	169..192	CDD:275380	11/22 (50%)
		leucine-rich repeat	193..217	CDD:275380	9/23 (39%)
		leucine-rich repeat	218..241	CDD:275380	8/22 (36%)
		leucine-rich repeat	242..265	CDD:275380	8/22 (36%)
		leucine-rich repeat	266..289	CDD:275380	8/22 (36%)
		leucine-rich repeat	290..313	CDD:275380	2/22 (9%)
		leucine-rich repeat	314..335	CDD:275380	5/20 (25%)
		leucine-rich repeat	339..363	CDD:275380	2/23 (9%)
		LRRCT	395..445	CDD:214507	21/55 (38%)
Lrfn5	NP_001101494.1	LRR 1	52..73		4/16 (25%)
		leucine-rich repeat	53..76	CDD:275380	5/19 (26%)
		LRR	<69..>211	CDD:443914	51/142 (36%)
		LRR 2	76..97		10/20 (50%)
		leucine-rich repeat	77..100	CDD:275380	11/22 (50%)
		LRR 3	100..121		9/21 (43%)
		leucine-rich repeat	101..124	CDD:275380	9/23 (39%)
		LRR 4	124..145		7/20 (35%)
		leucine-rich repeat	125..148	CDD:275380	8/22 (36%)
		LRR 5	148..169		8/20 (40%)
		leucine-rich repeat	149..172	CDD:275380	8/22 (36%)
		LRR 6	172..193		8/20 (40%)
		leucine-rich repeat	173..196	CDD:275380	8/22 (36%)
		LRR 7	196..217		2/30 (7%)
		leucine-rich repeat	197..215	CDD:275380	2/17 (12%)
		LRRCT	240..>272	CDD:214507	16/37 (43%)
		IgI_SALM5_like	287..374	CDD:409421	2/6 (33%)
		Ig strand A	287..290	CDD:409421	1/2 (50%)
		Ig strand A'	294..297	CDD:409421
		Ig strand B	303..311	CDD:409421
		Ig strand C	317..322	CDD:409421
		Ig strand C'	325..327	CDD:409421
		Ig strand D	333..337	CDD:409421
		Ig strand E	340..344	CDD:409421
		Ig strand F	354..361	CDD:409421
		Ig strand G	364..374	CDD:409421
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	383..416
		FN3	421..494	CDD:473895
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	614..719
		Metaviral_G	<631..714	CDD:462833