DRSC/TRiP Functional Genomics Resources

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Protein Alignment caps and Rtn4rl2

DIOPT Version :10

Sequence 1:NP_001303391.1 Gene:caps / 39493 FlyBaseID:FBgn0023095 Length:811 Species:Drosophila melanogaster
Sequence 2:NP_852045.1 Gene:Rtn4rl2 / 311169 RGDID:727797 Length:420 Species:Rattus norvegicus


Alignment Length:546 Identity:139/546 - (25%)
Similarity:191/546 - (34%) Gaps:170/546 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 CLCLVLATLPVALGLANCPNGCECDDDTLMVNCGEGTLDVLPIALNPAIQRLVIKNNKLKTIDSS 90
            ||.|.|..||..  ..:||..|.|......|:|.......:|::|.|:.|||.::|         
  Rat    16 CLLLTLLALPPV--TPSCPMLCTCYSSPPTVSCQANNFSSVPLSLPPSTQRLFLQN--------- 69

  Fly    91 MQFYAQLTFLDLSFNDMLTIPERSFAYHAKLQELHLDHNKIGQVSNKTFLGLSTISVLNLRGNLI 155
                                                                          |||
  Rat    70 --------------------------------------------------------------NLI 72

  Fly   156 AELEYRTFSPMVKLAELNLGQNRISHIDPHALDGLDNLRVLYLDDNTLTTV-PGELTFQALHSLA 219
            ..|...||.|                          ||..|:|..|.|:|: ||  ||:.|.:|.
  Rat    73 RSLRPGTFGP--------------------------NLLTLWLFSNNLSTIYPG--TFRHLQALE 109

  Fly   220 ELYLGTNSFM-TIPGGAFQDLKGLTRLDLRGAGLHNISGDALKGLVSLRFLDLSDNRLPAIPTAA 283
            ||.||.|..: ::....||.|:.|..|.|....|.::.|:..:|||||::|.|.:|.|       
  Rat   110 ELDLGDNRHLRSLEPDTFQGLERLQSLHLYRCQLSSLPGNIFRGLVSLQYLYLQENSL------- 167

  Fly   284 FQRLGRLEQLNIGQNDFEVISSGAFSGLRELRHLELTGAQRLRRVESGAFSGNTNLEHLNLSSNK 348
                     |:: |:|.       |:.|..|.||.|.| .|||.:....|.|..:|:.|.|..|:
  Rat   168 ---------LHL-QDDL-------FADLANLSHLFLHG-NRLRLLTEHVFRGLGSLDRLLLHGNR 214

  Fly   349 QLNELSSIALGGLPHLSTVVLKANQLSSL-DEGLVPWADLQTLDLSENPFECDCRL----LWLRH 408
             |..:...|..||..|:.:.|..|.|:|| .|.|.....|:.|.|:.||:.||||.    .|.:.
  Rat   215 -LQGVHRAAFHGLSRLTILYLFNNSLASLPGEALADLPALEFLRLNANPWACDCRARPLWAWFQR 278

  Fly   409 LLVSRNASGQYAPVICAYP--------TALRDLPLAHLAEPLL----GCAHGAASKQAIIGILVV 461
            ..||.      :.|.||.|        ..|||........|..    ..|.|.:|...:.|   |
  Rat   279 ARVSS------SDVTCATPPERQGRDLRTLRDTDFQACPPPTPTRPGSRARGNSSSNHLYG---V 334

  Fly   462 ACAALITTLALVLYTCRHRIREMLKGHSALGRK------EREYQKTFSDEEYMSRPP-PGGGGVH 519
            |.|.........||      |: |....:.||:      |.:|...:..|:...... ||.....
  Rat   335 AEAGAPPADPSTLY------RD-LPAEDSRGRQGGDAPTEDDYWGGYGGEDQRGEQTCPGAACQA 392

  Fly   520 PAAGGYPYIAGNSRMIPVTELXLEAP 545
            ||....|.::...| .|:..|.|.||
  Rat   393 PADSRGPVLSAGLR-TPLLCLLLLAP 417

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
capsNP_001303391.1 leucine-rich repeat 75..96 CDD:275380 4/20 (20%)
LRR_8 96..155 CDD:404697 1/58 (2%)
leucine-rich repeat 97..120 CDD:275380 0/22 (0%)
leucine-rich repeat 121..144 CDD:275380 0/22 (0%)
LRR 135..>398 CDD:443914 78/265 (29%)
leucine-rich repeat 145..168 CDD:275380 7/22 (32%)
leucine-rich repeat 169..192 CDD:275380 0/22 (0%)
leucine-rich repeat 193..217 CDD:275380 11/24 (46%)
leucine-rich repeat 218..241 CDD:275380 9/23 (39%)
leucine-rich repeat 242..265 CDD:275380 7/22 (32%)
leucine-rich repeat 266..289 CDD:275380 5/22 (23%)
leucine-rich repeat 290..313 CDD:275380 5/22 (23%)
leucine-rich repeat 314..335 CDD:275380 9/20 (45%)
leucine-rich repeat 339..363 CDD:275380 8/23 (35%)
LRRCT 395..445 CDD:214507 17/65 (26%)
Rtn4rl2NP_852045.1 LRR <55..>261 CDD:443914 83/330 (25%)
LRR 1 61..82 10/91 (11%)
leucine-rich repeat 62..83 CDD:275380 11/117 (9%)
LRR 2 83..104 11/22 (50%)
leucine-rich repeat 84..107 CDD:275380 11/24 (46%)
LRR 3 107..129 7/21 (33%)
leucine-rich repeat 108..132 CDD:275380 9/23 (39%)
LRR 4 132..153 5/20 (25%)
leucine-rich repeat 133..156 CDD:275380 7/22 (32%)
LRR 5 156..177 10/44 (23%)
leucine-rich repeat 157..180 CDD:275380 10/46 (22%)
LRR 6 180..201 9/21 (43%)
leucine-rich repeat 181..204 CDD:275380 10/23 (43%)
LRR 7 204..225 6/21 (29%)
leucine-rich repeat 205..228 CDD:275380 8/23 (35%)
LRR 8 228..249 8/20 (40%)
leucine-rich repeat 229..252 CDD:275380 8/22 (36%)
LRRCT 261..311 CDD:214507 16/55 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 286..390 26/113 (23%)
PHA03247 289..>369 CDD:223021 20/89 (22%)
Important for interaction with MAG. /evidence=ECO:0000269|PubMed:19420245 315..327 2/11 (18%)

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