DRSC/TRiP Functional Genomics Resources

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Protein Alignment caps and Rtn4rl1

DIOPT Version :10

Sequence 1:NP_001303391.1 Gene:caps / 39493 FlyBaseID:FBgn0023095 Length:811 Species:Drosophila melanogaster
Sequence 2:NP_852042.1 Gene:Rtn4rl1 / 303311 RGDID:727812 Length:445 Species:Rattus norvegicus


Alignment Length:608 Identity:136/608 - (22%)
Similarity:191/608 - (31%) Gaps:232/608 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 CLCLCLCLVLATLPVALGLANCPNGCECDDDTLMVNCGEGTLDVLPIALNPAIQRLVIKNNKLKT 86
            |:.|.|.|:...||::.|   ||..|.|....:.|:|.......:|..:....:|:.::||    
  Rat     7 CVELLLLLLAGELPLSGG---CPRDCVCYPSPMTVSCQAHNFAAIPEGIPEDSERIFLQNN---- 64

  Fly    87 IDSSMQFYAQLTFLDLSFNDMLTIPERSFAYHAKLQELHLDHNKIGQVSNKTFLGLSTISVLNLR 151
                     .:||                     ||:.|                          
  Rat    65 ---------HITF---------------------LQQGH-------------------------- 73

  Fly   152 GNLIAELEYRTFSPMVKLAELNLGQNRISHIDPHALDGLDNLRVLYLDDN-TLTTVPGELTFQAL 215
                       |||  .:..|.:..|.|:.|.|:..:|..:|..|.|.|| .|.|:..| |||.|
  Rat    74 -----------FSP--AMVTLWIYSNNITFIAPNTFEGFVHLEELDLGDNRQLRTLAPE-TFQGL 124

  Fly   216 HSLAELYLGTNSFMTIPGGAFQDLKGLTRLDLRGAGLHNISGDALKGLVSLRFLDLSDNRLPAIP 280
            ..|..|||......::|.|.|             .|||           ||::|.|.||.:    
  Rat   125 VKLHALYLYKCGLSSLPAGIF-------------GGLH-----------SLQYLYLQDNHI---- 161

  Fly   281 TAAFQRLGRLEQLNIGQNDFEVISSGAFSGLRELRHLELTGAQRLRRVESGAFSGNTNLEHLNLS 345
                                |.:....|..|..|.||.|.| .:|..:..|.|.|..||:.|.|.
  Rat   162 --------------------EYLQDDIFVDLVNLSHLFLHG-NKLWSLGQGIFRGLVNLDRLLLH 205

  Fly   346 SNKQLNELSSIALGGLPHLSTVVLKANQLSSLD-EGLVPWADLQTLDLSENPFECDCRLL----W 405
            .| ||..:...|...|..|:|:.|..|.|:.|. :.|.|...|:.|.|:.|.::|.||..    |
  Rat   206 EN-QLQWVHHKAFHDLHRLTTLFLFNNSLTELQGDCLAPLVALEFLRLNGNAWDCGCRARSLWEW 269

  Fly   406 LRHLLVSRNASGQYAPVICAYPTALRDLPLAHL-AEPLLGCAHGAASKQAIIGILVVACAALITT 469
            ||..      .|..:.|.||.|...:...|..| .|....|...|:..|                
  Rat   270 LRRF------RGSSSVVPCATPELRQGQDLKSLRVEDFRNCTGPASPHQ---------------- 312

  Fly   470 LALVLYTCRHRIREMLKGHSALGRKEREYQKTFSDEEYMSRPPPGGGGVHPAAG-----GYPY-- 527
                           :|.|: |...:|..:|..                ||:.|     |:|:  
  Rat   313 ---------------IKSHT-LSTSDRAARKEH----------------HPSHGASRDKGHPHGH 345

  Fly   528 -----------------------IAGNSRMIPVTELXLEAPP---------PPQLRGRGGGGGAS 560
                                   |:..|....:.||...||.         .|..|.:..|..|.
  Rat   346 LPGSRSGSKKPGKNCTSHRNRNQISKGSAGKELPELQDYAPDYQHKFSFDIMPTARPKRKGKCAR 410

  Fly   561 TASGAVQQLQVPSAVDQASNSFA 583
            ..     .::.||.|.|||:..|
  Rat   411 RT-----PIRAPSGVQQASSGTA 428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
capsNP_001303391.1 leucine-rich repeat 75..96 CDD:275380 3/20 (15%)
LRR_8 96..155 CDD:404697 5/58 (9%)
leucine-rich repeat 97..120 CDD:275380 2/22 (9%)
leucine-rich repeat 121..144 CDD:275380 3/22 (14%)
LRR 135..>398 CDD:443914 70/264 (27%)
leucine-rich repeat 145..168 CDD:275380 3/22 (14%)
leucine-rich repeat 169..192 CDD:275380 6/22 (27%)
leucine-rich repeat 193..217 CDD:275380 12/24 (50%)
leucine-rich repeat 218..241 CDD:275380 7/22 (32%)
leucine-rich repeat 242..265 CDD:275380 3/22 (14%)
leucine-rich repeat 266..289 CDD:275380 5/22 (23%)
leucine-rich repeat 290..313 CDD:275380 3/22 (14%)
leucine-rich repeat 314..335 CDD:275380 8/20 (40%)
leucine-rich repeat 339..363 CDD:275380 8/23 (35%)
LRRCT 395..445 CDD:214507 15/54 (28%)
Rtn4rl1NP_852042.1 leucine-rich repeat 37..58 CDD:275380 3/20 (15%)
LRR 1 55..76 9/91 (10%)
LRR 2 77..98 5/20 (25%)
leucine-rich repeat 78..101 CDD:275380 6/22 (27%)
LRR <80..>255 CDD:443914 66/225 (29%)
LRR 3 101..123 10/22 (45%)
leucine-rich repeat 102..126 CDD:275380 12/24 (50%)
LRR 4 126..147 7/33 (21%)
leucine-rich repeat 127..150 CDD:275380 10/46 (22%)
LRR 5 150..171 8/44 (18%)
leucine-rich repeat 151..174 CDD:275380 8/46 (17%)
LRR 6 174..195 8/21 (38%)
leucine-rich repeat 175..198 CDD:275380 9/23 (39%)
LRR 7 198..219 8/21 (38%)
leucine-rich repeat 199..222 CDD:275380 8/23 (35%)
LRR 8 222..243 7/20 (35%)
leucine-rich repeat 223..246 CDD:275380 8/22 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 304..380 15/123 (12%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 401..421 5/24 (21%)

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