Sequence 1: | NP_001303391.1 | Gene: | caps / 39493 | FlyBaseID: | FBgn0023095 | Length: | 811 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001159471.1 | Gene: | Lingo2 / 242384 | MGIID: | 2442298 | Length: | 606 | Species: | Mus musculus |
Alignment Length: | 423 | Identity: | 131/423 - (30%) |
---|---|---|---|
Similarity: | 191/423 - (45%) | Gaps: | 46/423 - (10%) |
- Green bases have known domain annotations that are detailed below.
Fly 13 PHLGQAFSLCLCLCLCLVLATLPVALGLANCPNGCECDDDTLMVNCGEGTLDVLPIALNPAIQRL 77
Fly 78 VIKNNKLKTIDSSMQF--YAQLTFLDLSFNDMLTIPERSFAYHAKLQELHLDHNKIGQVSNKTFL 140
Fly 141 GLSTISVLNLRGNLIAELEYRTFSPMVKLAELNLGQNRISHIDPHALDGLDNLRVLYLDDNTLTT 205
Fly 206 VPGELTFQALHSLAELYLGTNSFMTIPGGAFQDLKGLTRLDLRGAGLHNI-SGDALKGLVSLRFL 269
Fly 270 DLSDNRLPAIPTAAFQRLGRLEQLNIGQNDFEVISSGAFSGLRELRHLELTGAQRLRRVESGAFS 334
Fly 335 GNTNLEHLNLSSNKQLNELSSIALGGLPHLSTVVLKANQLSSLDEGLVPWADLQTLDLSENPFEC 399
Fly 400 DCRLLWLRHLLVSRNASGQYAPVICAYPTALRD 432 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
caps | NP_001303391.1 | leucine-rich repeat | 75..96 | CDD:275380 | 7/22 (32%) |
LRR_8 | 96..155 | CDD:290566 | 17/58 (29%) | ||
leucine-rich repeat | 97..120 | CDD:275380 | 6/22 (27%) | ||
leucine-rich repeat | 121..144 | CDD:275380 | 8/22 (36%) | ||
LRR_8 | 143..201 | CDD:290566 | 17/57 (30%) | ||
leucine-rich repeat | 145..168 | CDD:275380 | 5/22 (23%) | ||
LRR_RI | 147..397 | CDD:238064 | 78/250 (31%) | ||
leucine-rich repeat | 169..192 | CDD:275380 | 8/22 (36%) | ||
leucine-rich repeat | 193..217 | CDD:275380 | 9/23 (39%) | ||
LRR_8 | 217..276 | CDD:290566 | 16/59 (27%) | ||
leucine-rich repeat | 218..241 | CDD:275380 | 7/22 (32%) | ||
leucine-rich repeat | 242..265 | CDD:275380 | 6/23 (26%) | ||
LRR_8 | 265..321 | CDD:290566 | 18/55 (33%) | ||
leucine-rich repeat | 266..289 | CDD:275380 | 7/22 (32%) | ||
leucine-rich repeat | 290..313 | CDD:275380 | 9/22 (41%) | ||
LRR_8 | 312..374 | CDD:290566 | 19/61 (31%) | ||
leucine-rich repeat | 314..335 | CDD:275380 | 9/20 (45%) | ||
leucine-rich repeat | 339..363 | CDD:275380 | 5/23 (22%) | ||
LRRCT | 395..445 | CDD:214507 | 16/38 (42%) | ||
Lingo2 | NP_001159471.1 | LRRNT | 27..60 | CDD:214470 | 10/35 (29%) |
leucine-rich repeat | 39..57 | CDD:275380 | 4/17 (24%) | ||
LRR 1 | 58..79 | 6/21 (29%) | |||
leucine-rich repeat | 59..82 | CDD:275380 | 7/23 (30%) | ||
LRR_8 | 60..117 | CDD:404697 | 17/57 (30%) | ||
LRR 2 | 82..103 | 6/20 (30%) | |||
leucine-rich repeat | 83..106 | CDD:275380 | 6/22 (27%) | ||
LRR_8 | 106..165 | CDD:404697 | 18/58 (31%) | ||
LRR 3 | 106..127 | 6/20 (30%) | |||
leucine-rich repeat | 107..130 | CDD:275380 | 8/22 (36%) | ||
LRR 4 | 130..151 | 5/20 (25%) | |||
leucine-rich repeat | 131..154 | CDD:275380 | 5/22 (23%) | ||
LRR 5 | 154..175 | 6/20 (30%) | |||
leucine-rich repeat | 155..178 | CDD:275380 | 8/22 (36%) | ||
PPP1R42 | 176..>373 | CDD:411060 | 75/223 (34%) | ||
LRR 6 | 178..199 | 8/21 (38%) | |||
leucine-rich repeat | 179..202 | CDD:275380 | 9/23 (39%) | ||
LRR 7 | 202..223 | 7/20 (35%) | |||
leucine-rich repeat | 203..250 | CDD:275380 | 13/47 (28%) | ||
LRR 8 | 226..247 | 3/20 (15%) | |||
LRR 9 | 250..271 | 6/20 (30%) | |||
leucine-rich repeat | 251..274 | CDD:275380 | 7/22 (32%) | ||
LRR 10 | 274..295 | 7/20 (35%) | |||
leucine-rich repeat | 275..298 | CDD:275380 | 9/22 (41%) | ||
LRR 11 | 298..319 | 9/21 (43%) | |||
leucine-rich repeat | 299..322 | CDD:275380 | 10/23 (43%) | ||
LRR 12 | 322..343 | 9/37 (24%) | |||
leucine-rich repeat | 323..343 | CDD:275380 | 9/36 (25%) | ||
LRRCT | 355..408 | CDD:214507 | 16/38 (42%) | ||
Ig | 411..500 | CDD:416386 | |||
Ig strand A' | 417..421 | CDD:409353 | |||
Ig strand B | 427..436 | CDD:409353 | |||
Ig strand C | 441..446 | CDD:409353 | |||
Ig strand C' | 449..451 | CDD:409353 | |||
Ig strand D | 460..463 | CDD:409353 | |||
Ig strand E | 466..473 | CDD:409353 | |||
Ig strand F | 479..487 | CDD:409353 | |||
Ig strand G | 490..500 | CDD:409353 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 1 | 1.000 | - | - | mtm8753 | |
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R5661 |
SonicParanoid | 1 | 1.000 | - | - | X1280 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.940 |