Sequence 1: | NP_001303391.1 | Gene: | caps / 39493 | FlyBaseID: | FBgn0023095 | Length: | 811 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001013780.2 | Gene: | Lingo3 / 237403 | MGIID: | 3609246 | Length: | 589 | Species: | Mus musculus |
Alignment Length: | 613 | Identity: | 156/613 - (25%) |
---|---|---|---|
Similarity: | 225/613 - (36%) | Gaps: | 192/613 - (31%) |
- Green bases have known domain annotations that are detailed below.
Fly 29 LVLATLPVALGLANCPNGCECDDDTLMVNCGEGTLDVLPIALNPAIQRLVIKNNKLKTIDSSMQF 93
Fly 94 YAQLTFLDLSFNDMLTIPERSFAYHAKLQELHLDHNKIGQVSNKTFLGLSTISVLNLRGNLIAEL 158
Fly 159 EYRTFSPMVKLAELNLGQNRISHIDPHALDGLDNLRVLYLDDNTLTTVPGELTFQALHSLAELYL 223
Fly 224 GTNSFMTIPGGAFQDLKGLTRLDLRGAGLHNISGDA---LKGLVSLRF----------------- 268
Fly 269 ----------------------------LDLSDNRLPAIPTAAFQRLGRLEQLNIGQNDFEVISS 305
Fly 306 GAFSGLRELRHLELTGAQRLRRVESGAFSGNTNLEHLNLSSNKQLNELSSIALGGLPHLSTVVLK 370
Fly 371 ANQLSSLDEGLVPWADLQTLDLSENPFECDCRLLWLRHLLVSRNASGQYAPVICAYPTALRDLPL 435
Fly 436 AHLAEPLLGCAHGAASKQAIIGILVVACAALITTLALVLYTCRH-RIREMLKGHSALGRKEREYQ 499
Fly 500 KTFSDE-EYMSR----PPPGGGGVHP------AAGGYPYIAGNSRMIPVTELXLEAPPPPQLRG- 552
Fly 553 ------RGGGGGASTASGAVQQLQVPSA 574 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
caps | NP_001303391.1 | leucine-rich repeat | 75..96 | CDD:275380 | 2/20 (10%) |
LRR_8 | 96..155 | CDD:290566 | 18/58 (31%) | ||
leucine-rich repeat | 97..120 | CDD:275380 | 2/22 (9%) | ||
leucine-rich repeat | 121..144 | CDD:275380 | 10/22 (45%) | ||
LRR_8 | 143..201 | CDD:290566 | 15/57 (26%) | ||
leucine-rich repeat | 145..168 | CDD:275380 | 6/22 (27%) | ||
LRR_RI | 147..397 | CDD:238064 | 78/297 (26%) | ||
leucine-rich repeat | 169..192 | CDD:275380 | 5/22 (23%) | ||
leucine-rich repeat | 193..217 | CDD:275380 | 8/23 (35%) | ||
LRR_8 | 217..276 | CDD:290566 | 21/106 (20%) | ||
leucine-rich repeat | 218..241 | CDD:275380 | 8/22 (36%) | ||
leucine-rich repeat | 242..265 | CDD:275380 | 8/25 (32%) | ||
LRR_8 | 265..321 | CDD:290566 | 18/100 (18%) | ||
leucine-rich repeat | 266..289 | CDD:275380 | 7/67 (10%) | ||
leucine-rich repeat | 290..313 | CDD:275380 | 7/22 (32%) | ||
LRR_8 | 312..374 | CDD:290566 | 21/61 (34%) | ||
leucine-rich repeat | 314..335 | CDD:275380 | 10/20 (50%) | ||
leucine-rich repeat | 339..363 | CDD:275380 | 5/23 (22%) | ||
LRRCT | 395..445 | CDD:214507 | 18/49 (37%) | ||
Lingo3 | NP_001013780.2 | LRRNT | 23..55 | CDD:214470 | 12/34 (35%) |
leucine-rich repeat | 34..53 | CDD:275380 | 6/18 (33%) | ||
LRR 1 | 54..75 | 3/35 (9%) | |||
LRR | <55..353 | CDD:227223 | 92/370 (25%) | ||
leucine-rich repeat | 55..78 | CDD:275380 | 4/45 (9%) | ||
LRR 2 | 78..99 | 9/20 (45%) | |||
leucine-rich repeat | 79..102 | CDD:275380 | 10/22 (45%) | ||
LRR 3 | 102..123 | 10/44 (23%) | |||
leucine-rich repeat | 103..150 | CDD:275380 | 20/71 (28%) | ||
LRR 4 | 126..147 | 6/21 (29%) | |||
LRR 5 | 150..171 | 8/20 (40%) | |||
leucine-rich repeat | 151..174 | CDD:275380 | 8/22 (36%) | ||
LRR 6 | 174..195 | 6/20 (30%) | |||
leucine-rich repeat | 175..198 | CDD:275380 | 6/22 (27%) | ||
leucine-rich repeat | 199..222 | CDD:275380 | 3/22 (14%) | ||
LRR 7 | 206..227 | 0/20 (0%) | |||
leucine-rich repeat | 223..246 | CDD:275380 | 0/22 (0%) | ||
LRR_8 | 246..302 | CDD:338972 | 16/55 (29%) | ||
LRR 8 | 246..267 | 5/20 (25%) | |||
leucine-rich repeat | 247..270 | CDD:275380 | 5/22 (23%) | ||
LRR 9 | 270..291 | 6/20 (30%) | |||
leucine-rich repeat | 271..292 | CDD:275380 | 6/20 (30%) | ||
LRR 10 | 294..315 | 10/21 (48%) | |||
leucine-rich repeat | 295..318 | CDD:275380 | 11/23 (48%) | ||
LRR 11 | 318..339 | 10/37 (27%) | |||
leucine-rich repeat | 321..342 | CDD:275380 | 11/44 (25%) | ||
PCC | 331..>405 | CDD:188093 | 26/112 (23%) | ||
I-set | 406..496 | CDD:369462 | 24/104 (23%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 1 | 1.000 | - | - | X1280 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.910 |