DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment caps and Nrros

DIOPT Version :9

Sequence 1:NP_001303391.1 Gene:caps / 39493 FlyBaseID:FBgn0023095 Length:811 Species:Drosophila melanogaster
Sequence 2:NP_001334110.1 Gene:Nrros / 224109 MGIID:2445095 Length:693 Species:Mus musculus


Alignment Length:702 Identity:149/702 - (21%)
Similarity:235/702 - (33%) Gaps:259/702 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 LCLCLCLCLVLATLPVALGLANCPN--GCECDDDTLMVNCGEGTLDVLPIALNPAIQRLVIKNNK 83
            |.|||....::.......|.|...:  ||:..|.  :.:|....|..:|.:|.|..:.|::..|.
Mouse     6 LWLCLGFHFLIVEWRSGPGTATAASQGGCKVVDG--VADCRGLNLASVPSSLPPHSRMLILDANP 68

  Fly    84 LKTI-DSSMQFYAQLTFLDLSFNDMLTIPERSFAYHAKLQELHLDHNKIGQ------VSNKTFLG 141
            ||.: :.|:|.|.:|..|.|....:..|...:|.....|:.|.|..|::.:      .:..|.||
Mouse    69 LKDLWNHSLQAYPRLENLSLHSCHLDRISHYAFREQGHLRNLVLADNRLSENYKESAAALHTLLG 133

  Fly   142 ----------------------LSTISVLNLRGNLIAELEYRTFSPMVKLAELNLGQNRISHIDP 184
                                  ||::.|::|..|.:..|:...|..:..|.||:|.:|.|..|:.
Mouse   134 LRRLDLSGNSLTEDMAALMLQNLSSLEVVSLARNTLMRLDDSIFEGLEHLVELDLQRNYIFEIEG 198

  Fly   185 HALDGLDNLR------------------------------------------------------- 194
            .|.|||..||                                                       
Mouse   199 GAFDGLTELRRLNLAYNNLPCIVDFSLTQLRFLNVSYNILEWFLAAREEVAFELEILDLSHNQLL 263

  Fly   195 ------------VLYLDDNTL--------TTVPGELTFQ-----------------------ALH 216
                        .|.|.||.:        |:.|.|:..|                       .|.
Mouse   264 FFPLLPQCGKLHTLLLQDNNMGFYRELYNTSSPQEMVAQFLLVDGNVTNITTVNLWEEFSSSDLS 328

  Fly   217 SLAELYLGTNSFMTIPGGAFQD-------------LK-----------GLTRLDL---RGAGLHN 254
            :|..|.:..|.|..:|.|..:.             ||           .||.|||   :.|.||.
Mouse   329 ALRFLDMSQNQFRHLPDGFLKKTPSLSHLNLNQNCLKMLHIREHEPPGALTELDLSHNQLAELHL 393

  Fly   255 ISGDALKG-LVSLRFLDLSDNRLPAIPTAAFQRLGRLEQLNIGQNDFEVI------------SSG 306
            ..|  |.| |.:||..:||.|:|..:||..|.....:..:::..|...:.            |..
Mouse   394 APG--LTGSLRNLRVFNLSSNQLLGVPTGLFDNASSITTIDMSHNQISLCPQMVPVDWEGPPSCV 456

  Fly   307 AFSGLRELRHLELTGAQRLRRVESGAFSGNTNLEHLNLSSN-----------------KQLNELS 354
            .|..:..||.|.|.|. .|:.::...|.| |:|.||:||||                 .|:..|.
Mouse   457 DFRNMGSLRSLSLDGC-GLKALQDCPFQG-TSLTHLDLSSNWGVLNGSISPLWAVAPTLQVLSLR 519

  Fly   355 SIALG-------------------------------GLPHLSTVVLKANQLSSLDEGLV---PWA 385
            .:.||                               |...|.|:.|:.|.|::|.:.:|   |..
Mouse   520 DVGLGSGAAEMDFSAFGNLRALDLSGNSLTSFPKFKGSLALRTLDLRRNSLTALPQRVVSEQPLR 584

  Fly   386 DLQTLDLSENPFECDCRLL-W---LRHL-------LVSRNASGQYAPVICAYPTALRDLPLAHLA 439
            .|||:.||:||::| |.:. |   .:|.       :|:.|.|.:...|:        :||     
Mouse   585 GLQTIYLSQNPYDC-CGVEGWGALQQHFKTVADLSMVTCNLSSKIVRVV--------ELP----- 635

  Fly   440 EPLLGCAHGAASKQAIIG-----ILVVACAALITTLALVLYTCRHRIREMLK 486
               .|...|...:|...|     :::.:|..|:....:|..|.:..:.:::|
Mouse   636 ---EGLPQGCKWEQVDTGLFYLVLILPSCLTLLVACTVVFLTFKKPLLQVIK 684

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
capsNP_001303391.1 leucine-rich repeat 75..96 CDD:275380 7/21 (33%)
LRR_8 96..155 CDD:290566 17/86 (20%)
leucine-rich repeat 97..120 CDD:275380 5/22 (23%)
leucine-rich repeat 121..144 CDD:275380 8/50 (16%)
LRR_8 143..201 CDD:290566 21/124 (17%)
leucine-rich repeat 145..168 CDD:275380 5/22 (23%)
LRR_RI 147..397 CDD:238064 94/438 (21%)
leucine-rich repeat 169..192 CDD:275380 11/22 (50%)
leucine-rich repeat 193..217 CDD:275380 11/121 (9%)
LRR_8 217..276 CDD:290566 25/86 (29%)
leucine-rich repeat 218..241 CDD:275380 8/46 (17%)
leucine-rich repeat 242..265 CDD:275380 12/26 (46%)
LRR_8 265..321 CDD:290566 16/67 (24%)
leucine-rich repeat 266..289 CDD:275380 9/22 (41%)
leucine-rich repeat 290..313 CDD:275380 3/34 (9%)
LRR_8 312..374 CDD:290566 25/109 (23%)
leucine-rich repeat 314..335 CDD:275380 7/20 (35%)
leucine-rich repeat 339..363 CDD:275380 12/71 (17%)
LRRCT 395..445 CDD:214507 12/60 (20%)
NrrosNP_001334110.1 LRR 1. /evidence=ECO:0000255 58..79 5/20 (25%)
PLN00113 60..>439 CDD:215061 78/380 (21%)
leucine-rich repeat 60..82 CDD:275380 7/21 (33%)
LRR 2. /evidence=ECO:0000255 82..103 5/20 (25%)
leucine-rich repeat 83..106 CDD:275380 5/22 (23%)
LRR 3. /evidence=ECO:0000255 106..127 4/20 (20%)
leucine-rich repeat 107..133 CDD:275380 5/25 (20%)
LRR 4. /evidence=ECO:0000255 133..155 1/21 (5%)
leucine-rich repeat 134..158 CDD:275380 1/23 (4%)
LRR_8 157..217 CDD:404697 19/59 (32%)
LRR 5. /evidence=ECO:0000255 158..179 5/20 (25%)
leucine-rich repeat 159..182 CDD:275380 5/22 (23%)
LRR 6. /evidence=ECO:0000255 182..203 8/20 (40%)
leucine-rich repeat 183..206 CDD:275380 11/22 (50%)
LRR 7. /evidence=ECO:0000255 206..227 2/20 (10%)
leucine-rich repeat 207..251 CDD:275380 2/43 (5%)
LRR 8. /evidence=ECO:0000255 228..239 0/10 (0%)
leucine-rich repeat 230..249 CDD:275380 0/18 (0%)
LRR 9. /evidence=ECO:0000255 251..272 0/20 (0%)
leucine-rich repeat 252..273 CDD:275380 0/20 (0%)
LRR 10. /evidence=ECO:0000255 273..294 4/20 (20%)
leucine-rich repeat 274..329 CDD:275380 9/54 (17%)
PLN00113 309..>638 CDD:215061 79/349 (23%)
LRR 11. /evidence=ECO:0000255 329..350 6/20 (30%)
leucine-rich repeat 330..353 CDD:275380 6/22 (27%)
LRR 12. /evidence=ECO:0000255 353..374 2/20 (10%)
leucine-rich repeat 354..377 CDD:275380 2/22 (9%)
LRR 13. /evidence=ECO:0000255 377..398 9/22 (41%)
leucine-rich repeat 378..403 CDD:275380 12/26 (46%)
LRR 14. /evidence=ECO:0000255 403..424 9/20 (45%)
leucine-rich repeat 404..427 CDD:275380 9/22 (41%)
LRR 15. /evidence=ECO:0000255 427..448 1/20 (5%)
leucine-rich repeat 428..463 CDD:275380 3/34 (9%)
LRR 16. /evidence=ECO:0000255 463..484 7/21 (33%)
leucine-rich repeat 464..486 CDD:275380 8/23 (35%)
LRR 17. /evidence=ECO:0000255 486..507 7/20 (35%)
leucine-rich repeat 487..512 CDD:275380 7/24 (29%)
LRR 18. /evidence=ECO:0000255 512..533 4/20 (20%)
leucine-rich repeat 513..537 CDD:275380 4/23 (17%)
LRR 19. /evidence=ECO:0000255 537..558 1/20 (5%)
leucine-rich repeat 538..559 CDD:275380 1/20 (5%)
LRR 20. /evidence=ECO:0000255 559..580 7/20 (35%)
LRR 21. /evidence=ECO:0000255 585..605 9/20 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45617
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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