Protein Alignment caps and sym-1

DIOPT Version :9

• Sequence 1: NP_001303391.1
• Gene: caps / 39493
• FlyBaseID: FBgn0023095
• Length: 811
• Species: Drosophila melanogaster
• Sequence 2: NP_510426.1
• Gene: sym-1 / 181555
• WormBaseID: WBGene00006366
• Length: 680
• Species: Caenorhabditis elegans
• Alignment Length: 452
• Identity: 120/452 - (26%)
• Similarity: 201/452 - (44%)
• Gaps: 93/452 - (20%)

  Fly    23 LCLCLCLVLATLPVALGLANCP------NGCECDD--DTLMVNCG--EG-----------TLDVL 66
            :.|.||:.|..||..  ||.||      ..|.||.  :..::.|.  :|           |::|.
 Worm     1 MLLRLCVALLVLPAC--LAFCPKLFQNQTACSCDSTVEGPVIKCSGHDGLRMVEKLSTTTTMEVR 63

  Fly    67 PIALNPA--------------IQRLVIKNNKLKTIDSSMQFYAQLTFLDLSFNDMLTIPERSFAY 117
            .:||..|              |::|::.||:::.|.            |.:|..:..:
 Worm    64 ELALENADIIEVGPKAFKTLRIKKLILSNNRIEKIH------------DHAFTGLENV------- 109

  Fly   118 HAKLQELHLDHNKIGQVSNKTFLGLSTISVLNLRGNLIAELEYRTFSPMVKLAELNLGQNRISHI 182
               :|||.|..|.:.:|......||..:::|:|:.|.|..:..:.|..|..|.::|||.|:|..:
 Worm   110 ---MQELSLSENNLKEVPTSALAGLRVLNILSLKCNKIENITTKAFVNMTSLIDVNLGCNQICSM 171

  Fly   183 DPHALDGLDNLRV----LYLDDNTLTTVPGELTFQALHSLAELYLGTNSFMTIPGGAFQDLKGLT 243
               |.|...|:::    |.||:|.:|..|.: ..:.:::|..|::..|....|....|.:|..|:
 Worm   172 ---AADTFANVKMSLQNLILDNNCMTEFPSK-AVRNMNNLIALHIKYNKINAIRQNDFVNLTSLS 232

  Fly   244 RLDLRGAGLHNISGDALKGLVSLRFLDLSDNRLPAIPTAAFQRLGRLEQLNIGQNDFEVISSGAF 308
            .|.|.|..:..|.|.||:...:|.:|.|::|.|..:.....::..:|:.|::..|:|..|:...|
 Worm   233 MLSLNGNNISEIKGGALQNTPNLHYLYLNENNLQTLDNGVLEQFKQLQVLDLSFNNFTDITKEMF 297

  Fly   309 SGLRELRHLELTGAQRLRRVESGAFSGNTNLEHLNLSSNKQLNELSSIALGGLPHLSTVVLKANQ 373
            .||..::||.| .:.|:..|..|||:|...|  |....|..|.|:|...|.|.|.|..|.|..|.
 Worm   298 EGLESIQHLNL-DSNRISAVAPGAFAGTPLL--LLWLPNNCLTEVSQQTLKGAPFLRMVSLSNNN 359

  Fly   374 LSSLDE---GLVPWADLQTLDLSENPFECDCRLLWLRHLLVSRNASG--------QYAPVIC 424
            :..:.|   ..:|  :|.||||:.|      :::.|:    :::.||        |..||:|
 Worm   360 IREVHELSFDHLP--NLHTLDLANN------KIMSLQ----NKSLSGPENLAVRLQENPVVC 409

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
caps	NP_001303391.1	leucine-rich repeat	75..96	CDD:275380	4/20 (20%)
		LRR_8	96..155	CDD:290566	13/58 (22%)
		leucine-rich repeat	97..120	CDD:275380	2/22 (9%)
		leucine-rich repeat	121..144	CDD:275380	8/22 (36%)
		LRR_8	143..201	CDD:290566	18/61 (30%)
		leucine-rich repeat	145..168	CDD:275380	6/22 (27%)
		LRR_RI	147..397	CDD:238064	78/256 (30%)
		leucine-rich repeat	169..192	CDD:275380	8/22 (36%)
		leucine-rich repeat	193..217	CDD:275380	6/27 (22%)
		LRR_8	217..276	CDD:290566	18/58 (31%)
		leucine-rich repeat	218..241	CDD:275380	6/22 (27%)
		leucine-rich repeat	242..265	CDD:275380	8/22 (36%)
		LRR_8	265..321	CDD:290566	16/55 (29%)
		leucine-rich repeat	266..289	CDD:275380	5/22 (23%)
		leucine-rich repeat	290..313	CDD:275380	8/22 (36%)
		LRR_8	312..374	CDD:290566	22/61 (36%)
		leucine-rich repeat	314..335	CDD:275380	8/20 (40%)
		leucine-rich repeat	339..363	CDD:275380	8/23 (35%)
		LRRCT	395..445	CDD:214507	8/38 (21%)
sym-1	NP_510426.1	leucine-rich repeat	62..81	CDD:275380	4/18 (22%)
		LRR_5	74..208	CDD:290045	36/159 (23%)
		LRR_RI	81..384	CDD:238064	93/339 (27%)
		leucine-rich repeat	86..108	CDD:275380	6/33 (18%)
		leucine-rich repeat	110..133	CDD:275380	8/22 (36%)
		leucine-rich repeat	134..157	CDD:275380	6/22 (27%)
		leucine-rich repeat	158..182	CDD:275380	9/26 (35%)
		LRR_8	182..241	CDD:290566	16/59 (27%)
		leucine-rich repeat	183..206	CDD:275380	6/23 (26%)
		leucine-rich repeat	207..230	CDD:275380	6/22 (27%)
		leucine-rich repeat	231..254	CDD:275380	8/22 (36%)
		LRR_8	253..313	CDD:290566	16/60 (27%)
		leucine-rich repeat	255..278	CDD:275380	5/22 (23%)
		leucine-rich repeat	279..302	CDD:275380	8/22 (36%)
		LRR_8	302..384	CDD:290566	30/92 (33%)
		leucine-rich repeat	303..323	CDD:275380	8/20 (40%)
		leucine-rich repeat	350..373	CDD:275380	6/24 (25%)
		leucine-rich repeat	374..394	CDD:275380	7/29 (24%)
		leucine-rich repeat	399..410	CDD:275378	4/11 (36%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR45617
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	2.010