DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment caps and lron-15

DIOPT Version :9

Sequence 1:NP_001303391.1 Gene:caps / 39493 FlyBaseID:FBgn0023095 Length:811 Species:Drosophila melanogaster
Sequence 2:NP_495322.3 Gene:lron-15 / 174079 WormBaseID:WBGene00016974 Length:1275 Species:Caenorhabditis elegans


Alignment Length:574 Identity:123/574 - (21%)
Similarity:203/574 - (35%) Gaps:197/574 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 RLVIKNNKLKTIDS-SMQFYAQLTFLDLSFNDMLTIPERSFAYHAKLQELHLDHNKIG------- 132
            :::::|||::.:|. |.:.:.::..||:|:|.:.|:.:.||.....:|.|.|.:|:|.       
 Worm   290 KVILRNNKVRRLDKHSFRSFRKIRELDISYNQIQTVEDSSFETVGHMQSLDLSYNRIAYLPRGML 354

  Fly   133 -------------------------QVSNKTFLGL------------------------------ 142
                                     .:.|.|.|.|                              
 Worm   355 KNFAKTLKTLKLAENMIHATPEALRDLRNLTHLNLNGNKLNRIDGDVLKGCTDTLVELFIANNYL 419

  Fly   143 -----------------------------------------STISVLNLRGNLIAEL-EYRTFSP 165
                                                     ||:..|||.||.|..: :|..|..
 Worm   420 EHIPHGVLSGMKQLEHLDISKNKIMSLKKPTSLLSITKEETSTVRRLNLAGNRINNMSDYLIFEH 484

  Fly   166 MVKLAELNLGQNRISHIDPHALDGLDNLRVLYLDDNTLTTVPGELTFQALHSLAELYLGTNSFMT 230
            |..|..:::..|||..|.|...:.|.||..|:|.:|.|...|   :...|..|..|.|..|....
 Worm   485 MPLLTYVDVSFNRIRFISPRVFEKLKNLESLFLQNNQLAHFP---SLFRLDKLRHLMLDNNQIQK 546

  Fly   231 IPGGAFQDLKGLTRLDLRGAGL----HNISGDALKGLVSLRFLDLSDNRLPAIPTAAFQRLGRLE 291
            |...:..||..|..|.|.|..|    .|:.|.:...  .|:.|:|:.|::.:|.:.:|..|..|:
 Worm   547 IDNFSLADLPKLQHLSLAGNQLDIITENMFGSSSSS--ELKSLNLAHNKIHSISSRSFSDLDNLQ 609

  Fly   292 QLNIGQNDFEVISSGAFSGLRELRHLELT-----------------------GAQRLRRVESGAF 333
            ||.:..|:...|:|..||.||.||:|:|:                       ....|..::..||
 Worm   610 QLRLSHNNIRTITSMTFSNLRNLRYLDLSHNRIIKILPSALYQLPALDVLHLDHNNLNEIDRDAF 674

  Fly   334 SGNTNLEHLNLS-----------------------SNKQLNELSSIALG-GLPHLSTVVLKANQL 374
            ...::|:.|.||                       |:.|:||:....:. |:..||   |.:|.:
 Worm   675 RSFSDLQSLKLSHNAFRRFSCEFLGSISQVHQLDLSSNQINEIDIFCIARGIRKLS---LASNSV 736

  Fly   375 SSLDEGLVPWA-DLQTLDLSENPF-------ECDCRLLWLRHLLVSRN-------ASGQYAPVIC 424
            ..::..|:..| :|.::|:|.|..       .|:||.  |.|:.:|.|       .:.||...:.
 Worm   737 EKINRKLLQDATELTSIDISHNGIIDVDSDAFCECRK--LSHIKLSHNYIRNLWKGTFQYQESLH 799

  Fly   425 AYPTALRDLPLAHLAEPLLGCAHGAASKQAIIGILV-------VACAALITTLA 471
            ....:..|:...|         .|...|..|:.:.|       :...||.:|:|
 Worm   800 TLDISFNDILFLH---------QGTFGKNNILQLHVNNNKLSRIPLEALSSTMA 844

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
capsNP_001303391.1 leucine-rich repeat 75..96 CDD:275380 5/20 (25%)
LRR_8 96..155 CDD:290566 23/161 (14%)
leucine-rich repeat 97..120 CDD:275380 7/22 (32%)
leucine-rich repeat 121..144 CDD:275380 9/125 (7%)
LRR_8 143..201 CDD:290566 22/58 (38%)
leucine-rich repeat 145..168 CDD:275380 9/23 (39%)
LRR_RI 147..397 CDD:238064 81/302 (27%)
leucine-rich repeat 169..192 CDD:275380 7/22 (32%)
leucine-rich repeat 193..217 CDD:275380 7/23 (30%)
LRR_8 217..276 CDD:290566 18/62 (29%)
leucine-rich repeat 218..241 CDD:275380 7/22 (32%)
leucine-rich repeat 242..265 CDD:275380 7/26 (27%)
LRR_8 265..321 CDD:290566 21/78 (27%)
leucine-rich repeat 266..289 CDD:275380 7/22 (32%)
leucine-rich repeat 290..313 CDD:275380 9/22 (41%)
LRR_8 312..374 CDD:290566 21/108 (19%)
leucine-rich repeat 314..335 CDD:275380 7/43 (16%)
leucine-rich repeat 339..363 CDD:275380 9/47 (19%)
LRRCT 395..445 CDD:214507 12/63 (19%)
lron-15NP_495322.3 LRR_8 95..155 CDD:290566
leucine-rich repeat 120..144 CDD:275380
LRR_RI <144..348 CDD:238064 17/57 (30%)
LRR_8 144..205 CDD:290566
leucine-rich repeat 145..168 CDD:275380
leucine-rich repeat 169..194 CDD:275380
leucine-rich repeat 195..217 CDD:275380
LRR_8 217..274 CDD:290566
leucine-rich repeat 218..239 CDD:275380
leucine-rich repeat 240..263 CDD:275380
leucine-rich repeat 264..311 CDD:275380 5/20 (25%)
LRR_8 289..346 CDD:290566 16/55 (29%)
leucine-rich repeat 312..335 CDD:275380 7/22 (32%)
leucine-rich repeat 336..356 CDD:275380 5/19 (26%)
LRR_RI <338..498 CDD:238064 21/159 (13%)
leucine-rich repeat 361..383 CDD:275380 0/21 (0%)
leucine-rich repeat 384..405 CDD:275380 3/20 (15%)
LRR_8 408..473 CDD:290566 7/64 (11%)
leucine-rich repeat 409..432 CDD:275380 0/22 (0%)
leucine-rich repeat 433..462 CDD:275380 0/28 (0%)
LRR_8 461..522 CDD:290566 23/60 (38%)
leucine-rich repeat 463..487 CDD:275380 9/23 (39%)
leucine-rich repeat 488..511 CDD:275380 7/22 (32%)
LRR_8 510..568 CDD:290566 19/60 (32%)
LRR_4 510..551 CDD:289563 13/43 (30%)
leucine-rich repeat 512..533 CDD:275380 7/23 (30%)
LRR_4 533..573 CDD:289563 12/39 (31%)
leucine-rich repeat 534..557 CDD:275380 7/22 (32%)
leucine-rich repeat 558..581 CDD:275380 7/22 (32%)
LRR_8 583..642 CDD:290566 21/58 (36%)
leucine-rich repeat 584..607 CDD:275380 7/22 (32%)
LRR_RI <607..799 CDD:238064 45/196 (23%)
leucine-rich repeat 608..631 CDD:275380 9/22 (41%)
LRR_8 630..688 CDD:290566 12/57 (21%)
leucine-rich repeat 632..655 CDD:275380 4/22 (18%)
leucine-rich repeat 656..676 CDD:275380 3/19 (16%)
leucine-rich repeat 680..703 CDD:275380 4/22 (18%)
leucine-rich repeat 704..749 CDD:275380 11/47 (23%)
leucine-rich repeat 726..739 CDD:275378 4/15 (27%)
LRR_8 748..808 CDD:290566 13/61 (21%)
leucine-rich repeat 750..771 CDD:275380 5/20 (25%)
leucine-rich repeat 774..797 CDD:275380 6/22 (27%)
LRR_8 797..856 CDD:290566 10/57 (18%)
LRR_RI <798..982 CDD:238064 10/56 (18%)
leucine-rich repeat 798..845 CDD:275380 10/56 (18%)
LRR_8 845..904 CDD:290566 123/574 (21%)
leucine-rich repeat 846..869 CDD:275380
leucine-rich repeat 870..893 CDD:275380
leucine-rich repeat 894..915 CDD:275380
LRR_8 938..998 CDD:290566
leucine-rich repeat 940..963 CDD:275380
leucine-rich repeat 964..987 CDD:275380
leucine-rich repeat 988..1009 CDD:275380
leucine-rich repeat 1038..1064 CDD:275380
leucine-rich repeat 1113..1139 CDD:275380
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1280
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

Return to query results.
Submit another query.