DRSC/TRiP Functional Genomics Resources

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Protein Alignment caps and lron-11

DIOPT Version :9

Sequence 1:NP_001303391.1 Gene:caps / 39493 FlyBaseID:FBgn0023095 Length:811 Species:Drosophila melanogaster
Sequence 2:NP_491035.1 Gene:lron-11 / 171837 WormBaseID:WBGene00022129 Length:542 Species:Caenorhabditis elegans


Alignment Length:568 Identity:148/568 - (26%)
Similarity:243/568 - (42%) Gaps:87/568 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 VLATLPVALGLANCPNGCECDDDTLMVNCGEGTLDVLPIALNPAIQRLVIKNNKLKTIDS-SMQF 93
            ||..|.:..|:.:|.:||:|...|..| |...:|..:||.|:|....|.:.||::..:.: .:..
 Worm     5 VLILLVLVSGVISCQSGCKCPTKTTAV-CKGSSLRSIPILLDPRTTVLDLSNNRISRLSADELSL 68

  Fly    94 YAQLTFLDLSFNDMLTIPERSFAYHAKLQELHLDHNKIGQVSNKTFLGLSTISVLNLRGNLIAEL 158
            |..|..|.|..|.:..:....|:....|:.|.|..|.:..:.|:.|..|..:..|.:..|.: :|
 Worm    69 YPNLEQLILHNNSITHLSADVFSTLPSLRVLDLSSNSLLSLPNEVFSKLKNLKTLIISSNDV-QL 132

  Fly   159 EYRTFSPMVKLAELNLGQNRISHIDPHALDGLDNLRVLYLDDNTLTTVPGELTFQALHSLAELYL 223
            ....|:.:.:|..|::..||:|.:.|..|..|..||.|.|..|.|.::|..: ...|..|..|.|
 Worm   133 GPECFAGLSQLQTLSIADNRLSFLPPSVLKPLSGLRNLDLSANKLLSMPASV-MNNLGGLETLKL 196

  Fly   224 GTNSFMTIPGGAFQDLKGLTRLDLRGAGLHNISGD----ALKGLVSLRFLDLSDNRLPAIPTAAF 284
            ..|...::..|.|...|.|..||:.    .|:.||    ||.||..|..|:|::|:|..:|...:
 Worm   197 KQNLLSSLETGMFLSQKELKHLDVS----ENLIGDIEEGALYGLEKLETLNLTNNQLVRLPGNTW 257

  Fly   285 QRLGRLEQLNIGQNDFEVISSGAFSGLRELRHLELTGAQRLRRVESGAFSGNTNLEHLNLSSNKQ 349
            . |..|:.|::..|.|..:.:.:|.||..|::|.::.::.|:.::...|...::|..|::||: .
 Worm   258 S-LPALKTLDLSSNLFVSLETASFDGLPALQYLNISHSRNLKTIQMATFVQLSSLHWLSISSS-A 320

  Fly   350 LNELSSIALGGLPHLSTVVLKANQLSSLDEGLVPWADLQTLDLSENPFECDCRLLWLRHLLVSRN 414
            |..:...|...:|.||.:.|..|:|..:..|::.|.:::.|.|:.|.:.|.|.|. :.:|....:
 Worm   321 LTHIHPSAFNPIPPLSHLDLSNNELRYVAPGMLQWPNIRNLHLANNDWHCSCDLR-VSNLNPRDD 384

  Fly   415 ASGQYAPVICAYPTALRDLPLAHLAE-PLLGCAHGAASKQAIIGILVVACAAL-ITTLALVL--Y 475
            |.       |:.|..|...|:..|:. .:||            |:|:.....| |..||||:  .
 Worm   385 AK-------CSGPENLAGAPINELSSCSILG------------GLLIPFLLVLFILLLALVILAL 430

  Fly   476 TCRHRIREMLKGHS-------ALGRKEREYQ------KTFSDEE-----YMS--------RPPPG 514
            .|:......||..:       |.....:||.      .|.|.|:     |.|        ||||.
 Worm   431 ACKKSKPVSLKNRAFYNDQLIAALNSHKEYSFDCHSPYTMSSEDSRDSAYESPTSALMPRRPPPS 495

  Fly   515 ------------GGGVHPAA----------GGYPYIAGNSRMIPVTEL 540
                        .|..|.|.          ...||:...|: :|:|.|
 Worm   496 CPPPPRLLTLPRAGPTHVAPPMVPVPNFRNSNDPYLIPKSQ-VPITRL 542

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
capsNP_001303391.1 leucine-rich repeat 75..96 CDD:275380 4/21 (19%)
LRR_8 96..155 CDD:290566 14/58 (24%)
leucine-rich repeat 97..120 CDD:275380 5/22 (23%)
leucine-rich repeat 121..144 CDD:275380 7/22 (32%)
LRR_8 143..201 CDD:290566 16/57 (28%)
leucine-rich repeat 145..168 CDD:275380 4/22 (18%)
LRR_RI 147..397 CDD:238064 72/253 (28%)
leucine-rich repeat 169..192 CDD:275380 8/22 (36%)
leucine-rich repeat 193..217 CDD:275380 8/23 (35%)
LRR_8 217..276 CDD:290566 21/62 (34%)
leucine-rich repeat 218..241 CDD:275380 6/22 (27%)
leucine-rich repeat 242..265 CDD:275380 10/26 (38%)
LRR_8 265..321 CDD:290566 16/55 (29%)
leucine-rich repeat 266..289 CDD:275380 7/22 (32%)
leucine-rich repeat 290..313 CDD:275380 7/22 (32%)
LRR_8 312..374 CDD:290566 15/61 (25%)
leucine-rich repeat 314..335 CDD:275380 4/20 (20%)
leucine-rich repeat 339..363 CDD:275380 6/23 (26%)
LRRCT 395..445 CDD:214507 12/50 (24%)
lron-11NP_491035.1 leucine-rich repeat 48..71 CDD:275380 4/22 (18%)
LRR_RI <50..177 CDD:238064 33/127 (26%)
LRR_8 70..130 CDD:290566 14/59 (24%)
leucine-rich repeat 72..95 CDD:275380 5/22 (23%)
leucine-rich repeat 96..119 CDD:275380 7/22 (32%)
LRR_8 118..177 CDD:290566 17/59 (29%)
leucine-rich repeat 120..142 CDD:275380 4/22 (18%)
LRR_RI <141..270 CDD:238064 42/134 (31%)
leucine-rich repeat 143..166 CDD:275380 8/22 (36%)
leucine-rich repeat 167..190 CDD:275380 8/23 (35%)
LRR_8 190..249 CDD:290566 21/62 (34%)
leucine-rich repeat 191..214 CDD:275380 6/22 (27%)
leucine-rich repeat 215..238 CDD:275380 10/26 (38%)
LRR_8 238..295 CDD:290566 16/57 (28%)
leucine-rich repeat 239..261 CDD:275380 7/22 (32%)
leucine-rich repeat 262..283 CDD:275380 5/20 (25%)
LRR_8 284..345 CDD:290566 15/61 (25%)
leucine-rich repeat 286..310 CDD:275380 4/23 (17%)
leucine-rich repeat 311..334 CDD:275380 6/23 (26%)
leucine-rich repeat 335..357 CDD:275380 7/21 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3BG7P
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm14510
orthoMCL 1 0.900 - - OOG6_103993
Panther 1 1.100 - - O PTHR45617
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.810

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