Protein Alignment caps and Lrrn3

DIOPT Version :10

• Sequence 1: NP_001303391.1
• Gene: caps / 39493
• FlyBaseID: FBgn0023095
• Length: 811
• Species: Drosophila melanogaster
• Sequence 2: NP_034863.1
• Gene: Lrrn3 / 16981
• MGIID: 106036
• Length: 707
• Species: Mus musculus
• Alignment Length: 395
• Identity: 113/395 - (28%)
• Similarity: 176/395 - (44%)
• Gaps: 49/395 - (12%)

  Fly    36 VALGLA------------NCPNGCECD-----------DDTLMVNCGEGTLDVLPIALNPAIQRL 77
            |.||||            :||..|.|:           .:...|:|.:..|...|..|....|.|
Mouse    10 VLLGLAITTLVQAIDKKVDCPQLCTCEIRPWFTPRSIYMEASTVDCNDLGLLNFPARLPADTQIL 74

  Fly    78 VIKNNKLKTIDSSMQFYAQLTFLDLSFNDMLTIPERSFAYHAKLQELHLDHNKIGQVSNKTFLGL 142
            :::.|.:..|:.|..|...||.||||.|::.::...:....::|..::|:.||:.::..|...||
Mouse    75 LLQTNNIARIEHSTDFPVNLTGLDLSQNNLSSVTNINVQKMSQLLSVYLEENKLTELPEKCLYGL 139

  Fly   143 STISVLNLRGNLIAELEYRTFSPMVKLAELNLGQNRISHIDPHALDGLDNLRVLYLDDNTLTTVP 207
            |                        .|.||.:..|.:|.|.|.|..||.||..|:|:.|.|..:.
Mouse   140 S------------------------NLQELYVNHNLLSTISPGAFIGLHNLLRLHLNSNRLQMIN 180

  Fly   208 GELTFQALHSLAELYLGTNSFMTIPGGAFQDLKGLTRLDLRGAGLHNISGDALKGLVSLRFLDLS 272
            .: .|.||.:|..|.||.|..:.|....||.|..|..|.:.|..|..|..|||.||.:|..:...
Mouse   181 SQ-WFDALPNLEILMLGDNPIIRIKDMNFQPLVKLRSLVIAGINLTEIPDDALAGLENLESISFY 244

  Fly   273 DNRLPAIPTAAFQRLGRLEQLNIGQNDFEVISSGAFSGLRELRHLELTGAQRLRRVESGAFSGNT 337
            ||||..:|..|.|:...|:.|::.:|....|..|.||.:..|:.|.:.....|..::|.|.....
Mouse   245 DNRLSKVPQVALQKAVNLKFLDLNKNPINRIRRGDFSNMLHLKELGINNMPELVSIDSLAVDNLP 309

  Fly   338 NLEHLNLSSNKQLNELSSIALGGLPHLSTVVLKANQLSSLDEGLV-PWADLQTLDLSENPFECDC 401
            :|..:..::|.:|:.:...|...||.|.:::|..|.||:|..|.: ...:|:.:.:..||..|||
Mouse   310 DLRKIEATNNPRLSYIHPNAFFRLPKLESLMLNTNALSALYHGTIESLPNLKEISIHSNPIRCDC 374

  Fly   402 RLLWL 406
            .:.|:
Mouse   375 VIRWI 379

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
caps	NP_001303391.1	leucine-rich repeat	75..96	CDD:275380	6/20 (30%)
		LRR_8	96..155	CDD:404697	15/58 (26%)
		leucine-rich repeat	97..120	CDD:275380	7/22 (32%)
		leucine-rich repeat	121..144	CDD:275380	7/22 (32%)
		LRR	135..>398	CDD:443914	78/263 (30%)
		leucine-rich repeat	145..168	CDD:275380	0/22 (0%)
		leucine-rich repeat	169..192	CDD:275380	10/22 (45%)
		leucine-rich repeat	193..217	CDD:275380	8/23 (35%)
		leucine-rich repeat	218..241	CDD:275380	9/22 (41%)
		leucine-rich repeat	242..265	CDD:275380	10/22 (45%)
		leucine-rich repeat	266..289	CDD:275380	8/22 (36%)
		leucine-rich repeat	290..313	CDD:275380	7/22 (32%)
		leucine-rich repeat	314..335	CDD:275380	5/20 (25%)
		leucine-rich repeat	339..363	CDD:275380	5/23 (22%)
		LRRCT	395..445	CDD:214507	6/12 (50%)
Lrrn3	NP_034863.1	LRRNT	28..72	CDD:214470	9/43 (21%)
		LRR 1	70..91		5/20 (25%)
		leucine-rich repeat	72..93	CDD:275380	6/20 (30%)
		LRR	76..>370	CDD:443914	92/318 (29%)
		LRR 2	93..114		7/20 (35%)
		leucine-rich repeat	94..117	CDD:275380	7/22 (32%)
		LRR 3	117..138		5/20 (25%)
		leucine-rich repeat	118..141	CDD:275380	8/46 (17%)
		LRR 4	141..162		8/20 (40%)
		leucine-rich repeat	142..165	CDD:275380	10/22 (45%)
		LRR 5	165..186		7/21 (33%)
		leucine-rich repeat	166..189	CDD:275380	8/23 (35%)
		LRR 6	189..210		7/20 (35%)
		leucine-rich repeat	190..213	CDD:275380	9/22 (41%)
		LRR 7	213..234		8/20 (40%)
		leucine-rich repeat	214..237	CDD:275380	10/22 (45%)
		LRR 8	237..258		7/20 (35%)
		leucine-rich repeat	238..261	CDD:275380	8/22 (36%)
		LRR 9	261..282		6/20 (30%)
		leucine-rich repeat	262..285	CDD:275380	7/22 (32%)
		LRR 10	285..304		4/18 (22%)
		leucine-rich repeat	286..310	CDD:275380	5/23 (22%)
		LRR 11	310..332		4/21 (19%)
		leucine-rich repeat	311..333	CDD:275380	4/21 (19%)
		LRR 12	335..358		7/22 (32%)
		leucine-rich repeat	336..359	CDD:275380	7/22 (32%)
		PCC	341..>405	CDD:188093	13/39 (33%)
		Ig_3	427..500	CDD:464046
		fn3	526..593	CDD:394996