DRSC/TRiP Functional Genomics Resources

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Protein Alignment caps and Lrrn2

DIOPT Version :10

Sequence 1:NP_001303391.1 Gene:caps / 39493 FlyBaseID:FBgn0023095 Length:811 Species:Drosophila melanogaster
Sequence 2:NP_034862.1 Gene:Lrrn2 / 16980 MGIID:106037 Length:730 Species:Mus musculus


Alignment Length:539 Identity:146/539 - (27%)
Similarity:224/539 - (41%) Gaps:100/539 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 ATLPVALGLANCPNGCECD-----------DDTLMVNCGEGTLDVLPIALNPAIQRLVIKNNKLK 85
            |..||......||..|.|.           .:...|:|.:..|..:|..|....|.|::::|.:.
Mouse    18 AAAPVVPWRVPCPPQCACQIRPWYTPRSSYREATTVDCNDLFLTAVPPRLPAGTQTLLLQSNSIS 82

  Fly    86 TID-SSMQFYAQLTFLDLSFNDMLTIPERSFAYHAKLQELHLDHNKIGQVSNKTFLGLSTISVLN 149
            .|| :.:.:.|.||.||||.|......:..|....:|..|||:.|::.::.:.:|.||::     
Mouse    83 RIDQTELAYLANLTELDLSQNSFSDARDCDFQALPQLLSLHLEENRLNRLEDHSFAGLTS----- 142

  Fly   150 LRGNLIAELEYRTFSPMVKLAELNLGQNRISHIDPHALDGLDNLRVLYLDDNTLTTVPGELTFQA 214
                               |.||.|..|::..|.|.|..||.||..|:|:.|.|.|:... .|:.
Mouse   143 -------------------LQELYLNHNQLCRISPRAFAGLGNLLRLHLNSNLLRTIDSR-WFEM 187

  Fly   215 LHSLAELYLGTNSFMTIPGGAFQDLKGLTRLDLRGAGLHNISGDALKGLVSLRFLDLSDNRLPAI 279
            |.:|..|.:|.|....|....|:.|..|..|.|.|..|..||..||:||.||..|...||:|..:
Mouse   188 LPNLEILMIGGNKVDAILDMNFRPLANLRSLVLAGMSLREISDYALEGLQSLESLSFYDNQLAQV 252

  Fly   280 PTAAFQRLGRLEQLNIGQNDFEVISSGAFSGLRELRHLELTGAQRLRRVESGAFSGNTNLEHLNL 344
            |..|.:::..|:.|::.:|..:.:..|.|:.:..|:.|.|...:.|..::..|......|..|::
Mouse   253 PKRALEQVPGLKFLDLNKNPLQRVGPGDFANMLHLKELGLNNMEELVSIDKFALVNLPELTKLDI 317

  Fly   345 SSNKQLNELSSIALGGLPHLSTVVLKANQLSSLDEGLV-PWADLQTLDLSENPFECDCRLLWLRH 408
            ::|.:|:.:...|...||.:.|::|..|.||:|.:..| ...:||.:.|..||..|||.:.|   
Mouse   318 TNNPRLSFIHPRAFHHLPQMETLMLNNNALSALHQQTVESLPNLQEVGLHGNPIRCDCVIRW--- 379

  Fly   409 LLVSRNASGQYA------PVICAYPTAL-----RDLPLAHLAE---PLLGCAHGAASKQAIIGIL 459
                .||:|.:.      ..:||.|..|     |::|...:.:   ||:......:|.|...|  
Mouse   380 ----ANATGTHVRFIEPQSTLCAEPPDLQRRPVREVPFREMTDHCLPLISPRSFPSSLQIASG-- 438

  Fly   460 VVACAALITTLALVLYTCRHRIREMLKGHSALGRKERE-YQKTFSDEEYMSRPPPGGGGVHPAAG 523
                      .:.||: ||           ||...|.| |..|           |.|..:.||..
Mouse   439 ----------ESTVLH-CR-----------ALAEPEPEIYWVT-----------PAGVRLTPARS 470

  Fly   524 GYPYIAGNSRMIPVTELXL 542
            |..|     |:.|...|.|
Mouse   471 GRRY-----RVFPEGTLEL 484

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
capsNP_001303391.1 leucine-rich repeat 75..96 CDD:275380 5/21 (24%)
LRR_8 96..155 CDD:404697 16/58 (28%)
leucine-rich repeat 97..120 CDD:275380 8/22 (36%)
leucine-rich repeat 121..144 CDD:275380 8/22 (36%)
LRR 135..>398 CDD:443914 77/263 (29%)
leucine-rich repeat 145..168 CDD:275380 0/22 (0%)
leucine-rich repeat 169..192 CDD:275380 10/22 (45%)
leucine-rich repeat 193..217 CDD:275380 8/23 (35%)
leucine-rich repeat 218..241 CDD:275380 7/22 (32%)
leucine-rich repeat 242..265 CDD:275380 11/22 (50%)
leucine-rich repeat 266..289 CDD:275380 7/22 (32%)
leucine-rich repeat 290..313 CDD:275380 5/22 (23%)
leucine-rich repeat 314..335 CDD:275380 5/20 (25%)
leucine-rich repeat 339..363 CDD:275380 6/23 (26%)
LRRCT 395..445 CDD:214507 17/63 (27%)
Lrrn2NP_034862.1 LRRNT 28..72 CDD:214470 9/43 (21%)
leucine-rich repeat 51..69 CDD:275380 5/17 (29%)
leucine-rich repeat 71..94 CDD:275380 5/22 (23%)
LRR <85..>324 CDD:443914 76/263 (29%)
leucine-rich repeat 95..118 CDD:275380 8/22 (36%)
leucine-rich repeat 119..142 CDD:275380 8/22 (36%)
leucine-rich repeat 143..166 CDD:275380 10/22 (45%)
leucine-rich repeat 167..190 CDD:275380 8/23 (35%)
leucine-rich repeat 191..214 CDD:275380 7/22 (32%)
leucine-rich repeat 215..238 CDD:275380 11/22 (50%)
leucine-rich repeat 239..262 CDD:275380 7/22 (32%)
leucine-rich repeat 263..286 CDD:275380 5/22 (23%)
leucine-rich repeat 287..311 CDD:275380 5/23 (22%)
LRR_8 310..371 CDD:404697 18/60 (30%)
leucine-rich repeat 312..334 CDD:275380 5/21 (24%)
leucine-rich repeat 337..360 CDD:275378 7/22 (32%)
PCC 342..>420 CDD:188093 24/84 (29%)
leucine-rich repeat 361..373 CDD:275378 5/11 (45%)
Ig 430..514 CDD:472250 23/95 (24%)
Ig strand B 441..445 CDD:409421 2/4 (50%)
Ig strand C 454..458 CDD:409421 2/3 (67%)
Ig strand E 480..484 CDD:409421 1/3 (33%)
Ig strand F 494..499 CDD:409421
Ig strand G 507..510 CDD:409421
Blue background indicates that the domain is not in the aligned region.

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