DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment caps and Lrrn2

DIOPT Version :9

Sequence 1:NP_001303391.1 Gene:caps / 39493 FlyBaseID:FBgn0023095 Length:811 Species:Drosophila melanogaster
Sequence 2:NP_034862.1 Gene:Lrrn2 / 16980 MGIID:106037 Length:730 Species:Mus musculus


Alignment Length:539 Identity:146/539 - (27%)
Similarity:224/539 - (41%) Gaps:100/539 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 ATLPVALGLANCPNGCECD-----------DDTLMVNCGEGTLDVLPIALNPAIQRLVIKNNKLK 85
            |..||......||..|.|.           .:...|:|.:..|..:|..|....|.|::::|.:.
Mouse    18 AAAPVVPWRVPCPPQCACQIRPWYTPRSSYREATTVDCNDLFLTAVPPRLPAGTQTLLLQSNSIS 82

  Fly    86 TID-SSMQFYAQLTFLDLSFNDMLTIPERSFAYHAKLQELHLDHNKIGQVSNKTFLGLSTISVLN 149
            .|| :.:.:.|.||.||||.|......:..|....:|..|||:.|::.::.:.:|.||::     
Mouse    83 RIDQTELAYLANLTELDLSQNSFSDARDCDFQALPQLLSLHLEENRLNRLEDHSFAGLTS----- 142

  Fly   150 LRGNLIAELEYRTFSPMVKLAELNLGQNRISHIDPHALDGLDNLRVLYLDDNTLTTVPGELTFQA 214
                               |.||.|..|::..|.|.|..||.||..|:|:.|.|.|:... .|:.
Mouse   143 -------------------LQELYLNHNQLCRISPRAFAGLGNLLRLHLNSNLLRTIDSR-WFEM 187

  Fly   215 LHSLAELYLGTNSFMTIPGGAFQDLKGLTRLDLRGAGLHNISGDALKGLVSLRFLDLSDNRLPAI 279
            |.:|..|.:|.|....|....|:.|..|..|.|.|..|..||..||:||.||..|...||:|..:
Mouse   188 LPNLEILMIGGNKVDAILDMNFRPLANLRSLVLAGMSLREISDYALEGLQSLESLSFYDNQLAQV 252

  Fly   280 PTAAFQRLGRLEQLNIGQNDFEVISSGAFSGLRELRHLELTGAQRLRRVESGAFSGNTNLEHLNL 344
            |..|.:::..|:.|::.:|..:.:..|.|:.:..|:.|.|...:.|..::..|......|..|::
Mouse   253 PKRALEQVPGLKFLDLNKNPLQRVGPGDFANMLHLKELGLNNMEELVSIDKFALVNLPELTKLDI 317

  Fly   345 SSNKQLNELSSIALGGLPHLSTVVLKANQLSSLDEGLV-PWADLQTLDLSENPFECDCRLLWLRH 408
            ::|.:|:.:...|...||.:.|::|..|.||:|.:..| ...:||.:.|..||..|||.:.|   
Mouse   318 TNNPRLSFIHPRAFHHLPQMETLMLNNNALSALHQQTVESLPNLQEVGLHGNPIRCDCVIRW--- 379

  Fly   409 LLVSRNASGQYA------PVICAYPTAL-----RDLPLAHLAE---PLLGCAHGAASKQAIIGIL 459
                .||:|.:.      ..:||.|..|     |::|...:.:   ||:......:|.|...|  
Mouse   380 ----ANATGTHVRFIEPQSTLCAEPPDLQRRPVREVPFREMTDHCLPLISPRSFPSSLQIASG-- 438

  Fly   460 VVACAALITTLALVLYTCRHRIREMLKGHSALGRKERE-YQKTFSDEEYMSRPPPGGGGVHPAAG 523
                      .:.||: ||           ||...|.| |..|           |.|..:.||..
Mouse   439 ----------ESTVLH-CR-----------ALAEPEPEIYWVT-----------PAGVRLTPARS 470

  Fly   524 GYPYIAGNSRMIPVTELXL 542
            |..|     |:.|...| |
Mouse   471 GRRY-----RVFPEGTLEL 484

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
capsNP_001303391.1 leucine-rich repeat 75..96 CDD:275380 5/21 (24%)
LRR_8 96..155 CDD:290566 16/58 (28%)
leucine-rich repeat 97..120 CDD:275380 8/22 (36%)
leucine-rich repeat 121..144 CDD:275380 8/22 (36%)
LRR_8 143..201 CDD:290566 14/57 (25%)
leucine-rich repeat 145..168 CDD:275380 0/22 (0%)
LRR_RI 147..397 CDD:238064 73/250 (29%)
leucine-rich repeat 169..192 CDD:275380 10/22 (45%)
leucine-rich repeat 193..217 CDD:275380 8/23 (35%)
LRR_8 217..276 CDD:290566 23/58 (40%)
leucine-rich repeat 218..241 CDD:275380 7/22 (32%)
leucine-rich repeat 242..265 CDD:275380 11/22 (50%)
LRR_8 265..321 CDD:290566 16/55 (29%)
leucine-rich repeat 266..289 CDD:275380 7/22 (32%)
leucine-rich repeat 290..313 CDD:275380 5/22 (23%)
LRR_8 312..374 CDD:290566 15/61 (25%)
leucine-rich repeat 314..335 CDD:275380 5/20 (25%)
leucine-rich repeat 339..363 CDD:275380 6/23 (26%)
LRRCT 395..445 CDD:214507 17/63 (27%)
Lrrn2NP_034862.1 leucine-rich repeat 51..69 CDD:275380 5/17 (29%)
LRR_RI 62..288 CDD:238064 74/250 (30%)
leucine-rich repeat 71..94 CDD:275380 5/22 (23%)
leucine-rich repeat 95..118 CDD:275380 8/22 (36%)
LRR_8 117..177 CDD:290566 23/83 (28%)
leucine-rich repeat 119..142 CDD:275380 8/22 (36%)
leucine-rich repeat 143..166 CDD:275380 10/22 (45%)
LRR_8 166..222 CDD:290566 19/56 (34%)
leucine-rich repeat 167..190 CDD:275380 8/23 (35%)
leucine-rich repeat 191..214 CDD:275380 7/22 (32%)
LRR_RI 214..>372 CDD:238064 48/157 (31%)
LRR_8 214..273 CDD:290566 22/58 (38%)
leucine-rich repeat 215..238 CDD:275380 11/22 (50%)
leucine-rich repeat 239..262 CDD:275380 7/22 (32%)
leucine-rich repeat 263..286 CDD:275380 5/22 (23%)
leucine-rich repeat 287..311 CDD:275380 5/23 (22%)
LRR_8 310..371 CDD:290566 18/60 (30%)
leucine-rich repeat 312..334 CDD:275380 5/21 (24%)
leucine-rich repeat 337..360 CDD:275378 7/22 (32%)
leucine-rich repeat 361..373 CDD:275378 5/11 (45%)
TPKR_C2 369..412 CDD:301599 14/49 (29%)
I-set 430..514 CDD:254352 23/95 (24%)
Ig 438..514 CDD:299845 21/87 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H21274
Inparanoid 1 1.050 159 1.000 Inparanoid score I4234
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm8753
orthoMCL 1 0.900 - - OOG6_103993
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5661
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.890

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