DRSC/TRiP Functional Genomics Resources

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Protein Alignment caps and LOC1270808

DIOPT Version :10

Sequence 1:NP_001303391.1 Gene:caps / 39493 FlyBaseID:FBgn0023095 Length:811 Species:Drosophila melanogaster
Sequence 2:XP_309529.4 Gene:LOC1270808 / 1270808 VectorBaseID:AGAMI1_014460 Length:297 Species:Anopheles gambiae


Alignment Length:174 Identity:50/174 - (28%)
Similarity:80/174 - (45%) Gaps:21/174 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 DDDTLMVNCGEGTLDVLPIALNPAIQRLVIKNNKLKTIDSSMQFYAQLTFLDLSFN---DMLTIP 111
            ||.|.:|..|:...|.|     .:.::|.|:|..|:|    |..:..|..||.|.|   :::..|
Mosquito    67 DDSTYVVTIGKELADRL-----QSTEKLEIQNVSLQT----MVLWPNLRSLDASHNYFFELIVEP 122

  Fly   112 ERSFAYHAKLQELHLDHNKIGQVSNKTFL-GLSTISVLNLRGNLIAELEYRTFSPMVKLAELNLG 175
            .:::    :|:||:|.:|:...:.   |: .|..:..|:||.|.:..|.:..|....:|.:|||.
Mosquito   123 GQNY----QLRELNLSYNRFQSIE---FVQALPALRTLDLRHNYLESLSFSLFDMATELWKLNLA 180

  Fly   176 QNRISHIDPHALDGLDNLRVLYLDDNTLTTV-PGELTFQALHSL 218
            .||:..|.......|..|..|.|.||.|:.: ..|..|..|..|
Mosquito   181 NNRLQTISTDGSLHLPRLSTLLLHDNLLSVLDASEWRFSMLQEL 224

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
capsNP_001303391.1 leucine-rich repeat 75..96 CDD:275380 6/20 (30%)
LRR_8 96..155 CDD:404697 17/62 (27%)
leucine-rich repeat 97..120 CDD:275380 6/25 (24%)
leucine-rich repeat 121..144 CDD:275380 7/23 (30%)
LRR 135..>398 CDD:443914 26/86 (30%)
leucine-rich repeat 145..168 CDD:275380 6/22 (27%)
leucine-rich repeat 169..192 CDD:275380 8/22 (36%)
leucine-rich repeat 193..217 CDD:275380 9/24 (38%)
leucine-rich repeat 218..241 CDD:275380 1/1 (100%)
leucine-rich repeat 242..265 CDD:275380
leucine-rich repeat 266..289 CDD:275380
leucine-rich repeat 290..313 CDD:275380
leucine-rich repeat 314..335 CDD:275380
leucine-rich repeat 339..363 CDD:275380
LRRCT 395..445 CDD:214507
LOC1270808XP_309529.4 None
Blue background indicates that the domain is not in the aligned region.

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