DRSC/TRiP Functional Genomics Resources

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Protein Alignment caps and si:ch211-170a17.1

DIOPT Version :10

Sequence 1:NP_001303391.1 Gene:caps / 39493 FlyBaseID:FBgn0023095 Length:811 Species:Drosophila melanogaster
Sequence 2:XP_021336930.1 Gene:si:ch211-170a17.1 / 101884914 ZFINID:ZDB-LINCRNAG-131127-306 Length:628 Species:Danio rerio


Alignment Length:439 Identity:120/439 - (27%)
Similarity:183/439 - (41%) Gaps:54/439 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 CLCLVLATLPVA-----LGLA----------NCPNGCECDDDTLMVNCGEGTLDVLPIALNPAIQ 75
            ||..|:....|:     ||||          .||:.|||...:..|.|.......:|..:....:
Zfish    17 CLSRVMLHTAVSCWQPLLGLALVAVFVGSTLACPSRCECSAQSRSVICHRKRYTAIPDGVPLETR 81

  Fly    76 RLVIKNNKLKTID-SSMQFYAQLTFLDLSFNDMLTIPERSFAYHAKLQELHLDHNKIGQVSNKTF 139
            .|.:..|:::.:: .....|..:..||||.|.:..:...:|.....|..|.|..|:|..:|...|
Zfish    82 ILDLSKNRIQAVNPDDFAAYPHIEELDLSGNIIAYVEPGAFNSLYSLHSLSLKSNRIKLLSLGVF 146

  Fly   140 LGLSTISVLNLRGNLIAELEYRTFSPMVKLAELNLGQNRISHIDPHALDGLDNLRVLYLDDNTLT 204
            .|||.::.|::..|.:..|....|..:..|..|::|.|.:.:|...|..||.:|..|.|:...||
Zfish   147 TGLSNLTNLDISDNKVVILVDYMFQDLRNLRSLDVGDNELVYISHRAFSGLLSLESLTLERCNLT 211

  Fly   205 TVPGELTFQALHSLAELYLGTNSFMTIPGGAFQDLKGLTRLDL-RGAGLHNISGDALKGLVSLRF 268
            .||.: ....||:|..|::...:..|:...:|:.|..|..|:: ....|.....::|.|| :|..
Zfish   212 VVPTD-ALSHLHNLVSLHMRYLTISTLHPYSFKKLFHLRHLEIDNWPSLDVFPANSLHGL-NLTT 274

  Fly   269 LDLSDNRLPAIPTAAFQRLGRLEQLNIGQNDFEVISSGAFSGLRELRHLELTGAQRLRRVESGAF 333
            |.:::..|...|..|...|..|..||:..:....:..|....|..||.|.|.|: .|..:|..||
Zfish   275 LSVTNTNLSTFPYQALHHLPYLTHLNLSYSRIRTVEGGLLQNLVRLRELRLAGS-HLVSIEPYAF 338

  Fly   334 SGNTNLEHLNLSSNKQLNELSSIALGGLPHLSTVVLKANQLSSLDEGL--VPWADLQTLDLSENP 396
            .|...|..||:|.|:                         |.:|::|.  .|.| ||.|.::.||
Zfish   339 QGIRWLRLLNISHNR-------------------------LDTLEKGAFHAPEA-LQVLLINNNP 377

  Fly   397 FECDCRLLWL--RHLLVSRNASGQYAPVICAYPTALRDLPLAHLAEPLL 443
            ..|||||:||  ||..:|   .|...|. |:.|...:........|.||
Zfish   378 LVCDCRLMWLLQRHHSIS---FGDTQPE-CSSPEGSQRRQSKEFKEALL 422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
capsNP_001303391.1 leucine-rich repeat 75..96 CDD:275380 3/21 (14%)
LRR_8 96..155 CDD:404697 18/58 (31%)
leucine-rich repeat 97..120 CDD:275380 6/22 (27%)
leucine-rich repeat 121..144 CDD:275380 9/22 (41%)
LRR 135..>398 CDD:443914 73/265 (28%)
leucine-rich repeat 145..168 CDD:275380 4/22 (18%)
leucine-rich repeat 169..192 CDD:275380 8/22 (36%)
leucine-rich repeat 193..217 CDD:275380 8/23 (35%)
leucine-rich repeat 218..241 CDD:275380 5/22 (23%)
leucine-rich repeat 242..265 CDD:275380 6/23 (26%)
leucine-rich repeat 266..289 CDD:275380 6/22 (27%)
leucine-rich repeat 290..313 CDD:275380 5/22 (23%)
leucine-rich repeat 314..335 CDD:275380 9/20 (45%)
leucine-rich repeat 339..363 CDD:275380 5/23 (22%)
LRRCT 395..445 CDD:214507 19/51 (37%)
si:ch211-170a17.1XP_021336930.1 LRR 69..>378 CDD:443914 87/337 (26%)
leucine-rich repeat 80..103 CDD:275380 3/22 (14%)
leucine-rich repeat 104..127 CDD:275380 6/22 (27%)
leucine-rich repeat 128..151 CDD:275380 9/22 (41%)
leucine-rich repeat 152..175 CDD:275380 4/22 (18%)
leucine-rich repeat 176..223 CDD:275380 16/47 (34%)
leucine-rich repeat 224..247 CDD:275380 5/22 (23%)
leucine-rich repeat 248..295 CDD:275380 12/47 (26%)
leucine-rich repeat 296..319 CDD:275380 5/22 (23%)
leucine-rich repeat 320..343 CDD:275380 10/23 (43%)
leucine-rich repeat 344..363 CDD:275380 8/43 (19%)
PCC 348..>430 CDD:188093 30/105 (29%)
Ig_3 430..508 CDD:464046
Blue background indicates that the domain is not in the aligned region.

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