Protein Alignment caps and lingo3

DIOPT Version :10

• Sequence 1: NP_001303391.1
• Gene: caps / 39493
• FlyBaseID: FBgn0023095
• Length: 811
• Species: Drosophila melanogaster
• Sequence 2: XP_004911049.2
• Gene: lingo3 / 100497438
• XenbaseID: XB-GENE-6051175
• Length: 605
• Species: Xenopus tropicalis
• Alignment Length: 437
• Identity: 132/437 - (30%)
• Similarity: 198/437 - (45%)
• Gaps: 57/437 - (13%)

  Fly    19 FSLCLCLCLCL-----VLATLPVALGLANCPNGCECDDDTLMVNCGEGTLDVLPIALNPAIQRLV 78
            ||:.:.|.|.|     ||          .||..|:|..:...|.|....|..:|..:....:.|.
 Frog    11 FSIVVFLLLLLYPEWKVL----------GCPARCDCTPNQRSVICHRKRLTTIPEGIPSETRLLD 65

  Fly    79 IKNNKLKTID-SSMQFYAQLTFLDLSFNDMLTIPERSFAYHAKLQELHLDHNKIGQVSNKTFLGL 142
            :..|:::.:: .....|:.|..:|||.|.:.||...:||....||.|.|..|::..:....|..|
 Frog    66 LSKNRIRCLNPGDFSPYSLLEEVDLSENIISTIEPGAFANLFFLQILKLKGNQLKLIPTGVFTKL 130

  Fly   143 STISVLNLRGNLIAELEYRTFSPMVKLAELNLGQNRISHIDPHALDGLDNLRVLYLDDNTLTTV- 206
            |.:::|::..|.|..|....|..:..|..|.:|.|.:.:|...|..||.:|..|.::...||::
 Frog   131 SNLTLLDISENKIVILLDFMFQDLRSLKSLEVGDNDLLYISQKAFYGLVSLDQLTIEKCNLTSIS 195

  Fly   207 PGELTF-QALHSLAELYLGTNSFMTIPGGAFQDLKGLTRLDLRG-AGLHNISGDALKGLVSLRFL 269
            |..|:: |.|..|...|||.||   :....||.|..|..|:|.. ..|.::...|.:|| :|..|
 Frog   196 PESLSYLQGLEVLRLRYLGINS---LEEQNFQKLYNLKELELESWPLLEDVCNTAFQGL-NLTSL 256

  Fly   270 DLSDNRLPAIPTAAFQRLGRLEQLNIGQNDFEVISSGAFSGLRELRHLELTGAQRLRRVESGAFS 334
            .::...|.::|:||.:.:..||.||:..|...:|..|||..|..||.|.:.|| .|..|||.||.
 Frog   257 SITYTNLTSVPSAALRNMVYLEYLNLSFNPIRIIQRGAFKDLVRLRELHIVGA-FLSTVESQAFL 320

  Fly   335 GNTNLEHLNLSSNKQLNELSSIALGGLPHLSTVVLKANQLSSLDEGLVPWAD-LQTLDLSENPFE 398
            |...:..||:|:                         |.|::|:|......: |:||.:.:||..
 Frog   321 GLRQIRLLNVSN-------------------------NLLATLEESAFQSVNTLETLRVDDNPLA 360

  Fly   399 CDCRLLWLRHLLVSRNASGQYAPVICAYP-----TALRDLPLAHLAE 440
            |||||||:.....:.|.. .:.|| ||.|     .||||.|.:.|.|
 Frog   361 CDCRLLWILQRRKTLNFD-NHQPV-CASPAKIQGNALRDFPDSILFE 405

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
caps	NP_001303391.1	leucine-rich repeat	75..96	CDD:275380	3/21 (14%)
		LRR_8	96..155	CDD:404697	19/58 (33%)
		leucine-rich repeat	97..120	CDD:275380	9/22 (41%)
		leucine-rich repeat	121..144	CDD:275380	7/22 (32%)
		LRR	135..>398	CDD:443914	80/266 (30%)
		leucine-rich repeat	145..168	CDD:275380	5/22 (23%)
		leucine-rich repeat	169..192	CDD:275380	8/22 (36%)
		leucine-rich repeat	193..217	CDD:275380	8/25 (32%)
		leucine-rich repeat	218..241	CDD:275380	9/22 (41%)
		leucine-rich repeat	242..265	CDD:275380	7/23 (30%)
		leucine-rich repeat	266..289	CDD:275380	6/22 (27%)
		leucine-rich repeat	290..313	CDD:275380	10/22 (45%)
		leucine-rich repeat	314..335	CDD:275380	11/20 (55%)
		leucine-rich repeat	339..363	CDD:275380	3/23 (13%)
		LRRCT	395..445	CDD:214507	22/51 (43%)
lingo3	XP_004911049.2	LRRNT	29..63	CDD:214470	8/33 (24%)
		leucine-rich repeat	61..84	CDD:275380	3/22 (14%)
		LRR	63..>340	CDD:443914	91/306 (30%)
		leucine-rich repeat	85..108	CDD:275380	9/22 (41%)
		leucine-rich repeat	109..132	CDD:275380	7/22 (32%)
		leucine-rich repeat	133..156	CDD:275380	5/22 (23%)
		leucine-rich repeat	157..180	CDD:275380	8/22 (36%)
		leucine-rich repeat	181..204	CDD:275380	6/22 (27%)
		leucine-rich repeat	205..228	CDD:275380	10/25 (40%)
		leucine-rich repeat	229..252	CDD:275380	7/23 (30%)
		leucine-rich repeat	253..276	CDD:275380	6/22 (27%)
		leucine-rich repeat	277..298	CDD:275380	9/20 (45%)
		leucine-rich repeat	301..324	CDD:275380	12/23 (52%)
		leucine-rich repeat	325..345	CDD:275380	7/44 (16%)
		PCC	329..>399	CDD:188093	28/96 (29%)
		Ig	413..502	CDD:472250
		Ig strand B	430..434	CDD:409561
		Ig strand C	443..447	CDD:409561
		Ig strand E	468..472	CDD:409561
		Ig strand F	482..487	CDD:409561
		Ig strand G	495..498	CDD:409561