DRSC/TRiP Functional Genomics Resources

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Protein Alignment caps and lrfn2

DIOPT Version :9

Sequence 1:NP_001303391.1 Gene:caps / 39493 FlyBaseID:FBgn0023095 Length:811 Species:Drosophila melanogaster
Sequence 2:XP_031758515.1 Gene:lrfn2 / 100491687 XenbaseID:XB-GENE-6035533 Length:765 Species:Xenopus tropicalis


Alignment Length:720 Identity:151/720 - (20%)
Similarity:247/720 - (34%) Gaps:261/720 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   148 LNLRGNLIAELEYRTFSPMVKLAELNLGQNRISHIDPHALDGLDNLRVLYLDDNTLTTVPGELTF 212
            |.|.||.|..:..:.|:.|..|.:|.|.:|.||:|.|::...|::||.|:||.|.||.: |:..|
 Frog    56 LRLGGNFIISINRQDFANMTGLVDLTLSRNTISYIQPYSFIDLESLRSLHLDSNRLTNL-GDDVF 119

  Fly   213 QALHSLAELYLGTNSFMTIPGGAFQDLKGLTRLDLRGAGLHNISGDALKGLVSLRFLDLSDNRLP 277
            :.|.:|..|.:..|...:|...||:||                       |.:|..||||.|.|.
 Frog   120 RGLINLQHLIMNNNQLNSIAEDAFEDL-----------------------LQTLEDLDLSYNNLK 161

  Fly   278 AIPTAAFQRLGRLEQLNIGQNDFEVISSGAFSGLRELRHLELTGAQRLRRVESGAFSGNTNLEHL 342
            .:|..|.:|:..|.||::..|....|:.|.|..|.:|..|:|| :.||:::........:   .:
 Frog   162 TVPWDAVRRMVNLHQLSLDHNLIYYITEGTFQDLNKLARLDLT-SNRLQKLPPDPIFARS---QI 222

  Fly   343 NLSSNKQLNELSSIALGGLPHLSTVVLKANQLSSLDEGLVPWADLQTLDLSENPFECDCRLLWLR 407
            :::|....:...|::.||                                  ||..|:|.|||||
 Frog   223 SMTSATPFSPPLSLSFGG----------------------------------NPLHCNCELLWLR 253

  Fly   408 HLLVSRNASGQYAPVICAYPTALRDLPLAHLAEPLLGCAHGAASKQAIIGILVVACAALITTLAL 472
            .|  .|....:    .||.|:||:.....::.|....|.                 ..|||.   
 Frog   254 RL--DREDDME----TCASPSALKGRYFWYVREEEFVCE-----------------PPLITQ--- 292

  Fly   473 VLYTCRHRIREMLKGHSA-----------------------LGRKERE--YQKTFSD------EE 506
              ||.|..:   |:|.:|                       :|...|.  |.....|      ::
 Frog   293 --YTQRLLV---LEGQTASLKCKAVGDPLPVIHWVAPDGRLIGNSSRTTVYDNGTLDILITTSKD 352

  Fly   507 YMSRPPPGGGGVHPAAGGYPYIAGNSRMIPVTELXLEAPPPPQLRGRGGGGGASTASGAVQQLQV 571
            |               |.:..||.|:                        .|..||...:..:|:
 Frog   353 Y---------------GTFTCIAANA------------------------AGELTAPVELSIVQI 378

  Fly   572 P---SAVDQASNSFAQLSHIHYMT--NNGQQQQAQQQ--------QSTS-------------KMH 610
            |   :...:.:...::||.|...|  |.|:.:.|.::        .||:             ||:
 Frog   379 PHVSNGTGRTAPPKSRLSDITSSTKSNRGEVKTAPEKAVVVSEVTSSTALVKWSVSKAAPKVKMY 443

  Fly   611 HSQQDMRLLACNGGKPLNATSLPRHRPPVVQESTLSHYSQPL--------------ANGI----- 656
            ..|.:     |:..:.|....:|......|..:.:|..:..|              |..|     
 Frog   444 QLQYN-----CSDDEVLIYRMIPASNKAFVVNNLVSGTAYDLCVLAIWDDTATTLTATNIVGCAQ 503

  Fly   657 RLTQDHFNHNQNQSHNQHYGG----------------------VYAKPCD----AMSEPGYIHNN 695
            ..||:.:...|:. |:|..||                      |..|.|:    .|:....:::.
 Frog   504 FFTQEDYQQCQSM-HSQFLGGTMILVIGGIIVATLLVFIVILMVRYKICNHSQGKMANVTNVYSQ 567

  Fly   696 SHYSLPLDHDLPPSPTPTPPPPALPLRNGV-----GMALIHGNTTGRRS---------FNNNNNV 746
            ::....:.:..||...     |.:.:||.:     |.|  |.:.:...|         ::.::|.
 Frog   568 TNGGNTVQNGAPPQTN-----PKVVVRNELMEFQCGSA--HSSVSSSSSSVNSPDGDDYSLHSNP 625

  Fly   747 STLSN 751
            |||||
 Frog   626 STLSN 630

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
capsNP_001303391.1 leucine-rich repeat 75..96 CDD:275380
LRR_8 96..155 CDD:290566 4/6 (67%)
leucine-rich repeat 97..120 CDD:275380
leucine-rich repeat 121..144 CDD:275380
LRR_8 143..201 CDD:290566 21/52 (40%)
leucine-rich repeat 145..168 CDD:275380 7/19 (37%)
LRR_RI 147..397 CDD:238064 65/248 (26%)
leucine-rich repeat 169..192 CDD:275380 9/22 (41%)
leucine-rich repeat 193..217 CDD:275380 11/23 (48%)
LRR_8 217..276 CDD:290566 15/58 (26%)
leucine-rich repeat 218..241 CDD:275380 8/22 (36%)
leucine-rich repeat 242..265 CDD:275380 1/22 (5%)
LRR_8 265..321 CDD:290566 21/55 (38%)
leucine-rich repeat 266..289 CDD:275380 10/22 (45%)
leucine-rich repeat 290..313 CDD:275380 8/22 (36%)
LRR_8 312..374 CDD:290566 10/61 (16%)
leucine-rich repeat 314..335 CDD:275380 6/20 (30%)
leucine-rich repeat 339..363 CDD:275380 4/23 (17%)
LRRCT 395..445 CDD:214507 17/49 (35%)
lrfn2XP_031758515.1 LRR_8 51..111 CDD:404697 22/54 (41%)
leucine-rich repeat 53..76 CDD:275380 7/19 (37%)
leucine-rich repeat 77..100 CDD:275380 9/22 (41%)
LRR_8 100..160 CDD:404697 26/83 (31%)
leucine-rich repeat 101..124 CDD:275380 11/23 (48%)
leucine-rich repeat 125..148 CDD:275380 8/45 (18%)
LRR_8 148..208 CDD:404697 22/60 (37%)
leucine-rich repeat 150..173 CDD:275380 10/22 (45%)
leucine-rich repeat 174..197 CDD:275380 8/22 (36%)
LRRCT 241..285 CDD:214507 17/49 (35%)
Ig 288..375 CDD:416386 21/133 (16%)
Ig strand A 288..291 CDD:409353 1/2 (50%)
Ig strand A' 295..298 CDD:409353 1/2 (50%)
Ig strand B 304..312 CDD:409353 1/7 (14%)
Ig strand C 318..323 CDD:409353 0/4 (0%)
Ig strand C' 326..328 CDD:409353 0/1 (0%)
Ig strand D 334..338 CDD:409353 1/3 (33%)
Ig strand E 341..345 CDD:409353 0/3 (0%)
Ig strand F 355..362 CDD:409353 2/6 (33%)
Ig strand G 365..375 CDD:409353 3/9 (33%)
fn3 417..485 CDD:394996 11/72 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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