DRSC/TRiP Functional Genomics Resources

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Protein Alignment caps and lrfn1.1

DIOPT Version :9

Sequence 1:NP_001303391.1 Gene:caps / 39493 FlyBaseID:FBgn0023095 Length:811 Species:Drosophila melanogaster
Sequence 2:XP_002940407.1 Gene:lrfn1.1 / 100487064 XenbaseID:XB-GENE-6045969 Length:742 Species:Xenopus tropicalis


Alignment Length:677 Identity:143/677 - (21%)
Similarity:213/677 - (31%) Gaps:255/677 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 LCLCLVLATLPVALGLANCPNGCECDDD--TLMVNCGEGTLDVLPIALNPAIQRLVIKNNKLKTI 87
            ||| ||:..|.......:||..|.|..:  ||.:.|.:..|..:|    |||.|        :|:
 Frog     5 LCL-LVMGALGYVEATQHCPGRCLCQSNSPTLTMLCAKTGLLFVP----PAIDR--------RTV 56

  Fly    88 DSSMQFYAQLTFLDLSFNDMLTIPERSFAYHAKLQELHLDHNKIGQVSNKTFLGLSTISVLNLRG 152
            :                                                           |.|..
 Frog    57 E-----------------------------------------------------------LRLTD 62

  Fly   153 NLIAELEYRTFSPMVKLAELNLGQNRISHIDPHALDGLDNLRVLYLDDNTLTTVPGELTFQALHS 217
            |.|..:..:.|:.|..|..|.|.:|.||.|.|.|...|.:||.|:::.|.|:.:..| .|:.|.:
 Frog    63 NFITIIRRKDFANMTNLVHLTLSRNTISQIVPLAFFDLRSLRALHMNSNRLSLLRHE-HFRGLGN 126

  Fly   218 LAELYLGTNSFMTIPGGAFQDLKGLTRLDLRGAGLHNISGDALKGLVSLRFLDLSDNRLPAIPTA 282
            |..|.||.|....|..|||.:.                       |.::..||||.|.|..:|..
 Frog   127 LRHLILGNNQISFIQPGAFVEF-----------------------LSTVEDLDLSYNNLEELPWE 168

  Fly   283 AFQRLGRLEQLNIGQNDFEVISSGAFSGLRELRHLELTGAQRLRRVESGAFSGNTNLEHLNLSSN 347
            ...::..|..|.:..|..:.|:.|.|:.|.:|..|::|..|..:......|..:..|.:...||.
 Frog   169 DIGQMVNLNTLTLDHNLIDHIAEGTFTMLHKLVRLDMTSNQLHKLPPDNLFLRSQVLANARGSSP 233

  Fly   348 KQLNELSSIALGGLPHLSTVVLKANQLSSLDEGLVPWADLQTLDLSENPFECDCRLLWLRHLLVS 412
            ..|    :|:.||                                  ||..|:|.|||||.|...
 Frog   234 SSL----AISFGG----------------------------------NPLHCNCELLWLRRLTRE 260

  Fly   413 RNASGQYAPVICAYPTALRDLPLAHLAEPLLGCAHGAASKQAIIGILVVACAALITTLALVLYTC 477
            .:..      .||.|..|.|.....:.|....|.                 ..|||         
 Frog   261 DDLE------TCASPEQLTDKYFWSIQEEEFICD-----------------PPLIT--------- 293

  Fly   478 RHRIRE--MLKGHS------ALGRKEREYQKTFSDEEYMSRPPPGGGGVHPAAGGYPYIAGNSRM 534
            ||...:  :::|.|      |:|                 .|.|   .:|..|.....|...:|:
 Frog   294 RHYASKPFVMEGQSVSLKCKAVG-----------------DPEP---SIHWIAPDGKLIHNTTRL 338

  Fly   535 ---------IPVTELXLEAPPPPQLRGRGGGGGASTASGAVQQLQVPSAVDQASNSFAQLSHIHY 590
                     |.:|.|            :..|.....||.|..:...|  |:.|      :..:..
 Frog   339 VAHDNGSLDIMITTL------------KDSGSFTCIASNAAGEATAP--VELA------IVPLPL 383

  Fly   591 MTNNGQQQQAQQQQST------------SKMHHSQQDMRLLACNGGKPLNATSLPRHRPPVVQES 643
            :.||....:.|...|:            :|.||   |.|::.    ..|.:||:      |:|..
 Frog   384 LVNNTAHIKEQDPGSSDITTSTKPGFNDTKSHH---DRRIVV----DKLKSTSV------VIQWP 435

  Fly   644 TLSHYSQPLANGIRLTQDHFNHNQNQS 670
            :..|..     |||:.|..:|.:.:.|
 Frog   436 SERHIP-----GIRMYQIQYNSSLDDS 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
capsNP_001303391.1 leucine-rich repeat 75..96 CDD:275380 2/20 (10%)
LRR_8 96..155 CDD:290566 3/58 (5%)
leucine-rich repeat 97..120 CDD:275380 0/22 (0%)
leucine-rich repeat 121..144 CDD:275380 0/22 (0%)
LRR_8 143..201 CDD:290566 19/57 (33%)
leucine-rich repeat 145..168 CDD:275380 6/22 (27%)
LRR_RI 147..397 CDD:238064 61/249 (24%)
leucine-rich repeat 169..192 CDD:275380 10/22 (45%)
leucine-rich repeat 193..217 CDD:275380 8/23 (35%)
LRR_8 217..276 CDD:290566 15/58 (26%)
leucine-rich repeat 218..241 CDD:275380 9/22 (41%)
leucine-rich repeat 242..265 CDD:275380 1/22 (5%)
LRR_8 265..321 CDD:290566 16/55 (29%)
leucine-rich repeat 266..289 CDD:275380 7/22 (32%)
leucine-rich repeat 290..313 CDD:275380 7/22 (32%)
LRR_8 312..374 CDD:290566 12/61 (20%)
leucine-rich repeat 314..335 CDD:275380 5/20 (25%)
leucine-rich repeat 339..363 CDD:275380 7/23 (30%)
LRRCT 395..445 CDD:214507 16/49 (33%)
lrfn1.1XP_002940407.1 leucine-rich repeat 55..78 CDD:275380 7/81 (9%)
PPP1R42 58..208 CDD:411060 51/173 (29%)
leucine-rich repeat 79..102 CDD:275380 10/22 (45%)
leucine-rich repeat 103..126 CDD:275380 8/23 (35%)
leucine-rich repeat 127..151 CDD:275380 10/46 (22%)
leucine-rich repeat 152..175 CDD:275380 7/22 (32%)
leucine-rich repeat 176..199 CDD:275380 7/22 (32%)
leucine-rich repeat 200..218 CDD:275380 4/17 (24%)
LRRCT 243..288 CDD:214507 16/50 (32%)
Ig 290..378 CDD:416386 25/136 (18%)
Ig strand A 290..293 CDD:409353 1/2 (50%)
Ig strand A' 298..301 CDD:409353 0/2 (0%)
Ig strand B 307..315 CDD:409353 1/7 (14%)
Ig strand C 321..326 CDD:409353 1/4 (25%)
Ig strand C' 329..331 CDD:409353 0/1 (0%)
Ig strand D 337..341 CDD:409353 1/3 (33%)
Ig strand E 344..348 CDD:409353 0/3 (0%)
Ig strand F 358..365 CDD:409353 1/6 (17%)
Ig strand G 368..378 CDD:409353 3/17 (18%)
fn3 418..492 CDD:394996 13/55 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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