DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment snky and Dcstamp

DIOPT Version :9

Sequence 1:NP_648633.2 Gene:snky / 39492 FlyBaseID:FBgn0086916 Length:715 Species:Drosophila melanogaster
Sequence 2:NP_083698.1 Gene:Dcstamp / 75766 MGIID:1923016 Length:470 Species:Mus musculus


Alignment Length:577 Identity:119/577 - (20%)
Similarity:212/577 - (36%) Gaps:180/577 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 RLFVNGATDLYVFIIFVLVTGTIFMLSLP-----VRAVILLIFVALVGKSGRTYLRAVAFAFIIS 117
            ||:..|.:      ||:.:.||......|     ::.:.:..|||.:..|    |.:.||.:|:.
Mouse     2 RLWTLGTS------IFLRLWGTYVFPRSPSWLDFIQHLGVCCFVAFLSVS----LFSAAFYWILP 56

  Fly   118 GPIANLVENAGEVARVFVCTT----------VLTYNLSKTRFDLMAKPFTNTLKHMRGDVEEIRH 172
             |:| |:.:...:..||:|.:          ||:..|.:.|..|:|   ..|...:.|.||.|  
Mouse    57 -PVA-LLSSVWMITCVFLCCSKRARCFILLAVLSCGLREGRNALIA---AGTGVVIFGHVENI-- 114

  Fly   173 TFYELQEVLVDLKYAVENSDIEDEKYGDKNTKPIYERWGRETSRMNVSEIGNGGKELPTPAAVQE 237
             ||..:.:|                  |..|                                  
Mouse   115 -FYNFRGLL------------------DSMT---------------------------------- 126

  Fly   238 RFQRNMRNRCKHQLRSGHRACLEVFRNGYRKCTTNFPSM--IAKAICWPYRVDIICELDLFGN-- 298
                     |..:.:|               .:.:||.:  ..:||.|.|  .:...|:||.:  
Mouse   127 ---------CNLRAKS---------------FSVHFPLLKRYTEAIQWIY--GLATPLNLFDDLV 165

  Fly   299 ------PDKICDPSAVVPQNFGETYVELLKAEKKLFDNSSQIVVNYEIKDEQFAKSQLKSAERTG 357
                  ...:..||..:..:..:|..|:|..       ...:||..|:                 
Mouse   166 SWNQTLVVSLFSPSHALEAHMNDTRGEVLGV-------LHHMVVTTEL----------------- 206

  Fly   358 QAFKEDFERQKRIFNKVMGILQKILCLFMLRMVYVSINYYVK-YLNDV--EFDNFYITKYFKHVD 419
                            :..:.||:|.|..|.::.||...::| :|...  :::|.||||.|...|
Mouse   207 ----------------LTSVGQKLLALAGLLLILVSTGLFLKRFLGPCGWKYENVYITKQFVRFD 255

  Fly   420 QRRKEQRIDAILPLRTYEKSKYIDVDHIFSRTHHESTTVCFNLLQFLLELVTAGLFILIDHLVVE 484
            ::.:.|:...:|||...|:.||:.|..: ..|..|..|:....|..|..|....||..:|:|:..
Mouse   256 EKERHQQRPCVLPLNKKERKKYVIVPSL-QLTPKEKKTLGLFFLPVLTYLYMWVLFAAVDYLLYR 319

  Fly   485 LLQIVRKRSKIVYQQDGEHEVRFNISGVGQMARLLRTTMHN--FNIHEKVSTSLSNKECLPNAHV 547
            |:..:.|:    :|.....||...:.|..|..   :..:|:  |||      |:....|:|...:
Mouse   320 LISSMNKQ----FQSLPGLEVHLKLRGEKQGT---QGVVHDSAFNI------SMFEPSCIPKPRL 371

  Fly   548 LPKKMYYQLILLYLIIIVLIYQSTTFLRMRRVICSFFYYKREKQRILFLYNRILRNR 604
            ...:.:..|.::.|.:|:|...|:..::::.::...||.|.|::||.:|:.::|..|
Mouse   372 SVSETWVPLSIILLTLIILGLLSSMLMQLKILVSVSFYPKVERERIEYLHAKLLEKR 428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snkyNP_648633.2 DC_STAMP 406..597 CDD:311636 50/192 (26%)
DcstampNP_083698.1 DC_STAMP 242..421 CDD:285077 50/192 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167850659
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S8351
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.790

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