DRSC/TRiP Functional Genomics Resources

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Protein Alignment snky and Ocstamp

DIOPT Version :10

Sequence 1:NP_648633.2 Gene:snky / 39492 FlyBaseID:FBgn0086916 Length:715 Species:Drosophila melanogaster
Sequence 2:XP_230857.6 Gene:Ocstamp / 311639 RGDID:1308620 Length:495 Species:Rattus norvegicus


Alignment Length:636 Identity:115/636 - (18%)
Similarity:179/636 - (28%) Gaps:248/636 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 PQSEGSTRIQCLRRFVTFLLGLVLGFL-LWKLAALNFTLG-RLFVNGATDLYVFIIFVLVTGTIF 81
            |.|......|.|  ....|..|:.|.: .|.::...:.|| ...|.....|:||:...||.    
  Rat    42 PASRNELLTQLL--LCVSLASLIAGLVHHWLVSLQLYPLGPPTLVTALCGLFVFLSLGLVP---- 100

  Fly    82 MLSLPVRAVILLIFVALVGKSGRTYLRAVAFAFIISGPIANLVENAGEVARVFVCTTVLTYNLSK 146
                |:|.:..|....|..:.||..|.:.:.|.:.:..:.|::.|...|.||..|.|        
  Rat   101 ----PIRCLFALSVPTLGSEQGRRLLLSYSAANLAAAVMPNVLANVRAVGRVLGCVT-------- 153

  Fly   147 TRFDLMAKPFTNTLKHMRGDVEEIRHTFYELQEVLVDLKYAVENSDIEDEKYGDKNTKPIYERWG 211
                             .|.:|.:.:|.|:|::...:|..|                       |
  Rat   154 -----------------EGSLESLLNTTYQLRQAARELVPA-----------------------G 178

  Fly   212 RETSRMNVSEI-GNGGKELPTPAAVQERFQRNMRNRCKHQLRSGHRACLEVFRNGYRKCTTNFPS 275
            :..||....|: |||                                  ..||......|     
  Rat   179 QAVSRSLTFEVEGNG----------------------------------SAFRLHTHTVT----- 204

  Fly   276 MIAKAICWPYRVDIICELDLFGNPDKICDPSAVVPQNFGETYVELLKAEKKLFDNSSQIVVNYEI 340
                                                                             
  Rat   205 ----------------------------------------------------------------- 204

  Fly   341 KDEQFAKSQLKSAERTGQAFKEDFERQKRIFNKVMGILQKILCLFMLRMVYVSINYYVKYLNDVE 405
                             |...|||...:.:....:|..:.:..||:|.::..|..|..:||.|:.
  Rat   205 -----------------QQILEDFSGLEFLARAALGTQRVVTGLFLLGLLGESAWYLHRYLTDLR 252

  Fly   406 FDNFYITKYF-KHVDQRRKEQRIDAILP--LRTYEKSKYIDVDHIFSRTHHESTTVC---FNLLQ 464
            |||.|.|:.. :.:.|......:.|..|  |:|.:           |:...|....|   ..||.
  Rat   253 FDNIYATRQLVRQLTQAGATHLLAAPPPWLLQTAQ-----------SKLSQEELLSCLLRLGLLA 306

  Fly   465 FLLELVTA-------GLFILIDHLVVELLQIVRKRSKIVYQQDGEHEVRFNI----------SGV 512
            .|| :.||       |.|:|....|.....:......:..:.|..::|...|          |..
  Rat   307 LLL-IATAVTVASDYGAFLLARAAVTWAQNLPSVPITLTVKYDASYKVLDFILFVLNQPPVESVF 370

  Fly   513 GQMARL----LRTTMHNFNIHEKVSTSLSNKECLPNAHVLPKKMYYQLI--LLYLIIIVLIYQST 571
            ..:.|.    ||.|.||.:              ||.|.  |.::...|.  .|.|:....:...|
  Rat   371 ASVQRSFQWELRFTSHNCH--------------LPQAQ--PPRVTAALAAGALQLLAGATLVLQT 419

  Fly   572 TFLRMRRVICSFFYYKREKQRILFLYNRILRNRLRSLEFLIHDAEDNLATH 622
            ...|:|..|.:.|:..:|.:|:..|..|:.|.         ||..|:...|
  Rat   420 YAWRLRHAIAASFFPAQEARRLSHLQARLRRR---------HDQSDHPDRH 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snkyNP_648633.2 DC_STAMP 406..597 CDD:462265 47/219 (21%)
OcstampXP_230857.6 DC_STAMP 253..444 CDD:462265 47/218 (22%)

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