DRSC/TRiP Functional Genomics Resources

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Protein Alignment trn and AT3G15410

DIOPT Version :9

Sequence 1:NP_001261796.1 Gene:trn / 39491 FlyBaseID:FBgn0010452 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_001189901.1 Gene:AT3G15410 / 820780 AraportID:AT3G15410 Length:590 Species:Arabidopsis thaliana


Alignment Length:469 Identity:115/469 - (24%)
Similarity:194/469 - (41%) Gaps:93/469 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 LVVQCGEGQLDVLPIALN--PSIQRLVIKSNKIKTIDSSIQFYAELTFLDLSSNHLMTIPQRTFA 103
            :|:.....:|..||.|:.  .:::.|.:..|.|..:...|.....|..||.|||.|..:|. :..
plant    77 VVLNVSHNKLSQLPAAIGELTAMKSLDVSFNSISELPEQIGSAISLVKLDCSSNRLKELPD-SIG 140

  Fly   104 YQKKLQEVHLNHNKIGQISNKTFIGLSAVTVLNLRGNQISELHQGTFTPLLKIEELNLGENRIGY 168
            ....|.::...:|:|..:. :..:..|.::.|::.||:::.|.:........:.|||..:|.:|.
plant   141 RCLDLSDLKATNNQISSLP-EDMVNCSKLSKLDVEGNKLTALSENHIASWTMLAELNACKNMLGV 204

  Fly   169 LDPKAFDGLSQLRILYLDDNALTTVPDPVIFQAMPSLAELFLGMNTLQSIQADAFQDLKGLTRLE 233
            | |:....||:|..|.|..|.:::||..:  ....||.|.:||:|:|.::.|: ..||..|..|:
plant   205 L-PQNIGSLSRLIRLDLHQNKISSVPPSI--GGCSSLVEFYLGINSLSTLPAE-IGDLSRLGTLD 265

  Fly   234 LKGASLR--------------NISHDSFLGLQ-------ELRILDLSDNRLDRI-------PSVG 270
            |:...|:              ::|::|..||.       .||.|.|..|.|..:       |:..
plant   266 LRSNQLKEYPVGACKLKLSYLDLSNNSLTGLHPELGNMTTLRKLVLVGNPLRTLRSSLVNGPTAA 330

  Fly   271 L-----SKLVRLEQLSLGQNDFE-VISEGAFMGLKQLKRLEVNGALRLKRVMTGAFSDNGNLEYL 329
            |     |:|...|:.|......| ||:..|.|.:.. |.|.:.| |.|..|.:..: ::|.:..:
plant   331 LLKYLRSRLSNSEETSASTPTKENVIASAARMSISS-KELSLEG-LNLSDVPSEVW-ESGEITKV 392

  Fly   330 NLSSNKMLLEVQEGALSGLSQLKHVVLKAN--------ALTSL-----------------AEGLF 369
            |||.|.  :|.....||....|:.::|..|        .|.||                 .:|..
plant   393 NLSKNS--IEELPAQLSTSVSLQTLILSRNKIKDWPGAILKSLPNLMCLKLDNNPLNQIPLDGFQ 455

  Fly   370 PWKDLQTLDLSENPLSCD-----CRVMWLHNLLVAK---NASQDDVSEL------------LCEF 414
            ....||.||||.|.:|..     |.:..|..|.:::   :...:|:..|            |...
plant   456 VVSGLQILDLSVNAVSFREHPKFCHLPQLRELYLSRIQLSEVPEDILNLSNLIILDLNQNSLQSI 520

  Fly   415 PERLRG-ESLRHLN 427
            |:.::. .||:||:
plant   521 PKGIKNMTSLKHLD 534

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trnNP_001261796.1 leucine-rich repeat 62..80 CDD:275380 4/17 (24%)
LRR_8 83..142 CDD:290566 15/58 (26%)
leucine-rich repeat 84..107 CDD:275380 8/22 (36%)
leucine-rich repeat 108..131 CDD:275380 3/22 (14%)
LRR_RI 129..421 CDD:238064 91/371 (25%)
LRR_8 132..190 CDD:290566 17/57 (30%)
leucine-rich repeat 132..155 CDD:275380 4/22 (18%)
leucine-rich repeat 156..179 CDD:275380 8/22 (36%)
leucine-rich repeat 180..204 CDD:275380 6/23 (26%)
LRR_8 203..263 CDD:290566 23/80 (29%)
leucine-rich repeat 205..228 CDD:275380 9/22 (41%)
leucine-rich repeat 229..252 CDD:275380 8/43 (19%)
LRR_8 252..308 CDD:290566 19/68 (28%)
leucine-rich repeat 253..276 CDD:275380 10/34 (29%)
leucine-rich repeat 277..300 CDD:275380 7/23 (30%)
leucine-rich repeat 301..322 CDD:275380 6/20 (30%)
LRR_8 325..384 CDD:290566 21/83 (25%)
leucine-rich repeat 326..350 CDD:275380 7/23 (30%)
leucine-rich repeat 351..373 CDD:275380 7/46 (15%)
AT3G15410NP_001189901.1 LRR_8 53..109 CDD:290566 7/31 (23%)
leucine-rich repeat 53..75 CDD:275380
leucine-rich repeat 76..98 CDD:275380 5/20 (25%)
leucine-rich repeat 99..121 CDD:275380 4/21 (19%)
leucine-rich repeat 122..137 CDD:275380 7/14 (50%)
leucine-rich repeat 145..167 CDD:275380 3/22 (14%)
leucine-rich repeat 168..214 CDD:275380 12/46 (26%)
LRR_RI <202..424 CDD:238064 63/230 (27%)
LRR_8 213..271 CDD:290566 20/60 (33%)
leucine-rich repeat 215..237 CDD:275380 6/23 (26%)
leucine-rich repeat 238..260 CDD:275380 9/22 (41%)
LRR_8 259..316 CDD:290566 13/56 (23%)
leucine-rich repeat 261..282 CDD:275380 4/20 (20%)
leucine-rich repeat 306..359 CDD:275380 15/52 (29%)
LRR_RI 358..562 CDD:238064 42/182 (23%)
leucine-rich repeat 367..388 CDD:275380 6/22 (27%)
leucine-rich repeat 389..411 CDD:275380 7/23 (30%)
LRR_8 411..468 CDD:290566 13/56 (23%)
leucine-rich repeat 412..435 CDD:275380 6/22 (27%)
leucine-rich repeat 436..459 CDD:275380 1/22 (5%)
leucine-rich repeat 460..483 CDD:275380 9/22 (41%)
leucine-rich repeat 484..506 CDD:275380 4/21 (19%)
LRR_8 505..564 CDD:290566 6/30 (20%)
leucine-rich repeat 507..529 CDD:275380 2/21 (10%)
leucine-rich repeat 530..553 CDD:275380 3/5 (60%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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