DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment trn and RLP35

DIOPT Version :9

Sequence 1:	NP_001261796.1	Gene:	trn / 39491	FlyBaseID:	FBgn0010452	Length:	751	Species:	Drosophila melanogaster
Sequence 2:	NP_001319521.1	Gene:	RLP35 / 820279	AraportID:	AT3G11080	Length:	943	Species:	Arabidopsis thaliana

Alignment Length:	439	Identity:	126/439 - (28%)
Similarity:	198/439 - (45%)	Gaps:	66/439 - (15%)

- Green bases have known domain annotations that are detailed below.

  Fly    17 ASIGVEPAAGLANCPPGCQCD--DNTLVVQCGEGQLDVLPIALNPSIQRLVIKSNK-IKTIDSSI 78
            |..|..|:: |.|.||..:.|  ||.|     .|.|....|:...::|.|:|.||. |.||..|:
plant   328 AFTGTLPSS-LFNIPPLIRLDLSDNQL-----NGTLHFGNISSPSNLQYLIIGSNNFIGTIPRSL 386

  Fly    79 QFYAELTFLDLSSNHLMT----IPQRTFAYQKKLQEVHLNHNKIGQIS-NKTFIGLSAVTVLNLR 138
            ..:..||..|||  ||.|    :....|::.|.|.::.|::.....|. |........:..|::.
plant   387 SRFVNLTLFDLS--HLNTQCRPVDFSIFSHLKSLDDLRLSYLTTTTIDLNDILPYFKTLRSLDIS 449

  Fly   139 GNQISELHQGTFT---PLLKIEELNLGENRIGYLD-PKAFDGLSQLRILYLDDNALT-TVPDPVI 198
            ||.:|..::.:.:   |...|:.|.|  :..|..| |:......:|..|.:.:|.:. .||.  .
plant   450 GNLVSATNKSSVSSDPPSQSIQSLYL--SGCGITDFPEILRTQHELGFLDVSNNKIKGQVPG--W 510

  Fly   199 FQAMPSLAELFLGMNTLQSIQADAFQDLKGLTRLELKG-----ASLRNISH--DSFL-GLQELRI 255
            ...:|:|..|.|..||..|.::.:.:  .||:.:....     ||..|.:.  .||: ||:.|..
plant   511 LWTLPNLFYLNLSNNTFISFESSSKK--HGLSSVRKPSMIHLFASNNNFTGKIPSFICGLRSLNT 573

  Fly   256 LDLSDNRLD-RIPSVGLSKL-VRLEQLSLGQNDFEVISEGAFMGL-KQLKRLEVNGAL---RLKR 314
            ||||:|..: .||.. :.|| ..|..|:|.||:   :|.|....: :.|:.|:|...|   :|.|
plant   574 LDLSENNYNGSIPRC-MEKLKSTLFVLNLRQNN---LSGGLPKHIFESLRSLDVGHNLLVGKLPR 634

  Fly   315 VMTGAFSDNGNLEYLNLSSNKMLLEVQEGALSGLSQLKHVVLKANALTS-LAEGLFPWKDLQTLD 378
            .:. .||   |||.||:.||: :.:.....||.||:|:.:||::||... :.|..||  :|:.:|
plant   635 SLI-RFS---NLEVLNVESNR-INDTFPFWLSSLSKLQVLVLRSNAFHGPIHEATFP--ELRIID 692

  Fly   379 LSEN----PLSCDCRVMWLHNLLVAKNASQDDVSELLCEFPERLRGESL 423
            :|.|    .|..:..|.|.....:.||..|.:         |:..|..|
plant   693 ISHNHFNGTLPTEYFVKWSAMSSLGKNEDQSN---------EKYMGSGL 732

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
trn	NP_001261796.1	leucine-rich repeat	62..80	CDD:275380	9/18 (50%)
		LRR_8	83..142	CDD:290566	17/63 (27%)
		leucine-rich repeat	84..107	CDD:275380	9/26 (35%)
		leucine-rich repeat	108..131	CDD:275380	4/23 (17%)
		LRR_RI	129..421	CDD:238064	87/315 (28%)
		LRR_8	132..190	CDD:290566	14/61 (23%)
		leucine-rich repeat	132..155	CDD:275380	5/25 (20%)
		leucine-rich repeat	156..179	CDD:275380	6/23 (26%)
		leucine-rich repeat	180..204	CDD:275380	5/24 (21%)
		LRR_8	203..263	CDD:290566	22/67 (33%)
		leucine-rich repeat	205..228	CDD:275380	6/22 (27%)
		leucine-rich repeat	229..252	CDD:275380	8/30 (27%)
		LRR_8	252..308	CDD:290566	20/58 (34%)
		leucine-rich repeat	253..276	CDD:275380	10/24 (42%)
		leucine-rich repeat	277..300	CDD:275380	7/23 (30%)
		leucine-rich repeat	301..322	CDD:275380	7/23 (30%)
		LRR_8	325..384	CDD:290566	23/63 (37%)
		leucine-rich repeat	326..350	CDD:275380	9/23 (39%)
		leucine-rich repeat	351..373	CDD:275380	8/22 (36%)
RLP35	NP_001319521.1	LRRNT_2	39..95	CDD:311940
		PLN00113	79..>658	CDD:331614	101/352 (29%)
		leucine-rich repeat	103..123	CDD:275380
		leucine-rich repeat	127..150	CDD:275380
		leucine-rich repeat	151..174	CDD:275380
		leucine-rich repeat	175..198	CDD:275380
		leucine-rich repeat	199..222	CDD:275380
		leucine-rich repeat	223..246	CDD:275380
		leucine-rich repeat	247..270	CDD:275380
		leucine-rich repeat	271..294	CDD:275380
		leucine-rich repeat	295..318	CDD:275380
		leucine-rich repeat	319..337	CDD:275380	3/9 (33%)
		leucine-rich repeat	343..367	CDD:275380	7/28 (25%)
		leucine-rich repeat	368..388	CDD:275380	9/19 (47%)
		leucine-rich repeat	392..417	CDD:275380	9/26 (35%)
		leucine-rich repeat	443..469	CDD:275380	5/25 (20%)
		leucine-rich repeat	470..492	CDD:275380	6/23 (26%)
		leucine-rich repeat	493..516	CDD:275380	5/24 (21%)
		leucine-rich repeat	517..541	CDD:275380	8/25 (32%)
		leucine-rich repeat	542..570	CDD:275380	7/27 (26%)
		leucine-rich repeat	571..594	CDD:275380	10/23 (43%)
		leucine-rich repeat	596..617	CDD:275380	7/23 (30%)
		leucine-rich repeat	618..641	CDD:275380	8/26 (31%)
		LRR_8	640..698	CDD:316378	24/63 (38%)
		leucine-rich repeat	642..665	CDD:275380	9/23 (39%)
		leucine-rich repeat	716..803	CDD:275380	6/26 (23%)
		PLN00113	<758..864	CDD:331614
		leucine-rich repeat	804..825	CDD:275380
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	0	0.000